Hb_000205_280

Information

Type -
Description -
Location Contig205: 335950-340815
Sequence    

Annotation

kegg
ID rcu:RCOM_0610080
description glycogenin, putative (EC:2.4.1.186)
nr
ID XP_012089482.1
description PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
swissprot
ID Q8GWB7
description Inositol phosphorylceramide glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=IPUT1 PE=1 SV=1
trembl
ID A0A067JIR2
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_23570 PE=3 SV=1
Gene Ontology
ID GO:0005794
description inositol phosphorylceramide glucuronosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21142: 336032-336158 , PASA_asmbl_21143: 336270-340492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_280 0.0 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
2 Hb_001103_090 0.0810487306 - - PREDICTED: patellin-3 [Populus euphratica]
3 Hb_000260_780 0.0811411245 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
4 Hb_001159_030 0.0866749462 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
5 Hb_158845_060 0.0871589527 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
6 Hb_000784_080 0.0905121 - - protein disulfide isomerase, putative [Ricinus communis]
7 Hb_000054_040 0.0916752131 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
8 Hb_000098_050 0.0939440396 - - BnaCnng11900D [Brassica napus]
9 Hb_001675_320 0.0960735895 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
10 Hb_000297_030 0.09672947 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
11 Hb_001558_040 0.0969158609 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
12 Hb_000359_190 0.0969668797 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
13 Hb_015026_100 0.0979879561 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
14 Hb_012760_030 0.0988463074 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
15 Hb_002007_260 0.1011104382 - - beta-mannosidase, putative [Ricinus communis]
16 Hb_005298_020 0.1028599459 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
17 Hb_000085_260 0.1038602753 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
18 Hb_000020_160 0.1045640063 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
19 Hb_005062_110 0.1067814233 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
20 Hb_001085_080 0.1067951993 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]

Gene co-expression network

sample Hb_000205_280 Hb_000205_280 Hb_001103_090 Hb_001103_090 Hb_000205_280--Hb_001103_090 Hb_000260_780 Hb_000260_780 Hb_000205_280--Hb_000260_780 Hb_001159_030 Hb_001159_030 Hb_000205_280--Hb_001159_030 Hb_158845_060 Hb_158845_060 Hb_000205_280--Hb_158845_060 Hb_000784_080 Hb_000784_080 Hb_000205_280--Hb_000784_080 Hb_000054_040 Hb_000054_040 Hb_000205_280--Hb_000054_040 Hb_001675_320 Hb_001675_320 Hb_001103_090--Hb_001675_320 Hb_001226_110 Hb_001226_110 Hb_001103_090--Hb_001226_110 Hb_000020_160 Hb_000020_160 Hb_001103_090--Hb_000020_160 Hb_001259_120 Hb_001259_120 Hb_001103_090--Hb_001259_120 Hb_001103_090--Hb_000260_780 Hb_009252_050 Hb_009252_050 Hb_000260_780--Hb_009252_050 Hb_002092_070 Hb_002092_070 Hb_000260_780--Hb_002092_070 Hb_000358_100 Hb_000358_100 Hb_000260_780--Hb_000358_100 Hb_000580_050 Hb_000580_050 Hb_000260_780--Hb_000580_050 Hb_000260_780--Hb_000020_160 Hb_000085_260 Hb_000085_260 Hb_001159_030--Hb_000085_260 Hb_010042_030 Hb_010042_030 Hb_001159_030--Hb_010042_030 Hb_005062_110 Hb_005062_110 Hb_001159_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_001159_030--Hb_002007_260 Hb_003038_040 Hb_003038_040 Hb_001159_030--Hb_003038_040 Hb_001097_040 Hb_001097_040 Hb_001159_030--Hb_001097_040 Hb_003964_110 Hb_003964_110 Hb_158845_060--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_158845_060--Hb_000599_360 Hb_000297_030 Hb_000297_030 Hb_158845_060--Hb_000297_030 Hb_080147_050 Hb_080147_050 Hb_158845_060--Hb_080147_050 Hb_001085_080 Hb_001085_080 Hb_158845_060--Hb_001085_080 Hb_021977_010 Hb_021977_010 Hb_158845_060--Hb_021977_010 Hb_012760_030 Hb_012760_030 Hb_000784_080--Hb_012760_030 Hb_000300_550 Hb_000300_550 Hb_000784_080--Hb_000300_550 Hb_000994_020 Hb_000994_020 Hb_000784_080--Hb_000994_020 Hb_001623_110 Hb_001623_110 Hb_000784_080--Hb_001623_110 Hb_027654_020 Hb_027654_020 Hb_000784_080--Hb_027654_020 Hb_004724_390 Hb_004724_390 Hb_000784_080--Hb_004724_390 Hb_000261_210 Hb_000261_210 Hb_000054_040--Hb_000261_210 Hb_000503_020 Hb_000503_020 Hb_000054_040--Hb_000503_020 Hb_000320_290 Hb_000320_290 Hb_000054_040--Hb_000320_290 Hb_002473_050 Hb_002473_050 Hb_000054_040--Hb_002473_050 Hb_001246_130 Hb_001246_130 Hb_000054_040--Hb_001246_130 Hb_000054_040--Hb_005062_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56008 6.32109 6.33554 9.51469 4.91386 3.35089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04499 1.10751 1.72064 6.57277 4.54594

CAGE analysis