Hb_004724_390

Information

Type -
Description -
Location Contig4724: 239328-254758
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16200g
description POPTRDRAFT_832942; hypothetical protein
nr
ID XP_011043354.1
description PREDICTED: nicalin-1-like [Populus euphratica]
swissprot
ID Q6NZ07
description Nicalin-1 OS=Danio rerio GN=ncl1 PE=2 SV=1
trembl
ID B9HQ38
description Nicalin OS=Populus trichocarpa GN=POPTR_0009s16200g PE=3 SV=2
Gene Ontology
ID GO:0016021
description endoplasmic plasma ef-hand calcium-binding nicastrin isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44392: 239375-254665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_390 0.0 - - PREDICTED: nicalin-1-like [Populus euphratica]
2 Hb_002045_170 0.0573041373 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
3 Hb_002687_180 0.0708536165 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
4 Hb_000497_190 0.0800017968 - - sterol isomerase, putative [Ricinus communis]
5 Hb_000317_110 0.0807152744 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_004228_120 0.0813723465 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
7 Hb_012760_030 0.0832563221 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
8 Hb_029584_120 0.0846309557 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
9 Hb_000054_040 0.084991898 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
10 Hb_003449_100 0.0871806962 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
11 Hb_001279_190 0.0881292783 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
12 Hb_001250_050 0.0886361699 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
13 Hb_000784_080 0.0895760559 - - protein disulfide isomerase, putative [Ricinus communis]
14 Hb_000954_010 0.0933757345 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
15 Hb_002304_050 0.0933809016 - - pyruvate kinase, putative [Ricinus communis]
16 Hb_000753_160 0.0943069854 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
17 Hb_002552_040 0.0950036848 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
18 Hb_000258_220 0.0956009791 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
19 Hb_000001_090 0.0956057555 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
20 Hb_011716_010 0.0980239951 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_390 Hb_004724_390 Hb_002045_170 Hb_002045_170 Hb_004724_390--Hb_002045_170 Hb_002687_180 Hb_002687_180 Hb_004724_390--Hb_002687_180 Hb_000497_190 Hb_000497_190 Hb_004724_390--Hb_000497_190 Hb_000317_110 Hb_000317_110 Hb_004724_390--Hb_000317_110 Hb_004228_120 Hb_004228_120 Hb_004724_390--Hb_004228_120 Hb_012760_030 Hb_012760_030 Hb_004724_390--Hb_012760_030 Hb_000954_010 Hb_000954_010 Hb_002045_170--Hb_000954_010 Hb_001250_050 Hb_001250_050 Hb_002045_170--Hb_001250_050 Hb_002045_170--Hb_002687_180 Hb_001246_130 Hb_001246_130 Hb_002045_170--Hb_001246_130 Hb_002045_170--Hb_000317_110 Hb_001279_190 Hb_001279_190 Hb_002687_180--Hb_001279_190 Hb_002687_180--Hb_004228_120 Hb_002687_180--Hb_001250_050 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_161568_010 Hb_161568_010 Hb_000497_190--Hb_161568_010 Hb_000261_210 Hb_000261_210 Hb_000497_190--Hb_000261_210 Hb_000154_050 Hb_000154_050 Hb_000497_190--Hb_000154_050 Hb_001450_020 Hb_001450_020 Hb_000497_190--Hb_001450_020 Hb_005730_010 Hb_005730_010 Hb_000497_190--Hb_005730_010 Hb_023344_140 Hb_023344_140 Hb_000317_110--Hb_023344_140 Hb_000317_110--Hb_002687_180 Hb_000034_110 Hb_000034_110 Hb_000317_110--Hb_000034_110 Hb_005305_130 Hb_005305_130 Hb_000317_110--Hb_005305_130 Hb_000046_600 Hb_000046_600 Hb_000317_110--Hb_000046_600 Hb_004228_120--Hb_001279_190 Hb_004228_120--Hb_002552_040 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_001227_120 Hb_001227_120 Hb_004228_120--Hb_001227_120 Hb_011716_010 Hb_011716_010 Hb_004228_120--Hb_011716_010 Hb_000784_080 Hb_000784_080 Hb_012760_030--Hb_000784_080 Hb_001623_110 Hb_001623_110 Hb_012760_030--Hb_001623_110 Hb_000890_030 Hb_000890_030 Hb_012760_030--Hb_000890_030 Hb_000671_030 Hb_000671_030 Hb_012760_030--Hb_000671_030 Hb_007919_110 Hb_007919_110 Hb_012760_030--Hb_007919_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.12206 14.2417 27.592 25.9526 13.1119 8.14475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.79949 6.84771 6.47039 15.7598 14.9542

CAGE analysis