Hb_002045_170

Information

Type -
Description -
Location Contig2045: 116556-128532
Sequence    

Annotation

kegg
ID rcu:RCOM_0991550
description interferon-induced guanylate-binding protein, putative
nr
ID XP_002520972.1
description interferon-induced guanylate-binding protein, putative [Ricinus communis]
swissprot
ID Q96PP9
description Guanylate-binding protein 4 OS=Homo sapiens GN=GBP4 PE=2 SV=2
trembl
ID B9S4R5
description Interferon-induced guanylate-binding protein, putative OS=Ricinus communis GN=RCOM_0991550 PE=4 SV=1
Gene Ontology
ID GO:0003924
description guanylate-binding family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_170 0.0 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
2 Hb_004724_390 0.0573041373 - - PREDICTED: nicalin-1-like [Populus euphratica]
3 Hb_000954_010 0.0718230961 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
4 Hb_001250_050 0.0761794019 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
5 Hb_002687_180 0.077974802 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
6 Hb_001246_130 0.0801783206 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
7 Hb_000317_110 0.0832909903 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_004531_150 0.08482915 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
9 Hb_000046_600 0.0853567249 - - PREDICTED: cullin-1-like [Jatropha curcas]
10 Hb_001159_060 0.0855763651 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
11 Hb_016461_020 0.086401847 - - conserved hypothetical protein [Ricinus communis]
12 Hb_044486_020 0.0879931248 - - CASTOR protein [Glycine max]
13 Hb_012760_030 0.0887404802 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
14 Hb_012262_040 0.0888711859 - - PREDICTED: uncharacterized protein LOC105633697 [Jatropha curcas]
15 Hb_001504_010 0.0890138618 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
16 Hb_000054_040 0.0892787268 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
17 Hb_000359_190 0.0894516081 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
18 Hb_003777_030 0.0898399641 - - Exocyst complex component, putative [Ricinus communis]
19 Hb_000702_090 0.0902116408 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
20 Hb_000172_360 0.0909817514 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]

Gene co-expression network

sample Hb_002045_170 Hb_002045_170 Hb_004724_390 Hb_004724_390 Hb_002045_170--Hb_004724_390 Hb_000954_010 Hb_000954_010 Hb_002045_170--Hb_000954_010 Hb_001250_050 Hb_001250_050 Hb_002045_170--Hb_001250_050 Hb_002687_180 Hb_002687_180 Hb_002045_170--Hb_002687_180 Hb_001246_130 Hb_001246_130 Hb_002045_170--Hb_001246_130 Hb_000317_110 Hb_000317_110 Hb_002045_170--Hb_000317_110 Hb_004724_390--Hb_002687_180 Hb_000497_190 Hb_000497_190 Hb_004724_390--Hb_000497_190 Hb_004724_390--Hb_000317_110 Hb_004228_120 Hb_004228_120 Hb_004724_390--Hb_004228_120 Hb_012760_030 Hb_012760_030 Hb_004724_390--Hb_012760_030 Hb_000103_290 Hb_000103_290 Hb_000954_010--Hb_000103_290 Hb_000702_090 Hb_000702_090 Hb_000954_010--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_000954_010--Hb_016172_030 Hb_000336_020 Hb_000336_020 Hb_000954_010--Hb_000336_020 Hb_060980_010 Hb_060980_010 Hb_000954_010--Hb_060980_010 Hb_003777_030 Hb_003777_030 Hb_001250_050--Hb_003777_030 Hb_001250_050--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_001250_050--Hb_001279_190 Hb_000753_160 Hb_000753_160 Hb_001250_050--Hb_000753_160 Hb_002739_120 Hb_002739_120 Hb_001250_050--Hb_002739_120 Hb_008289_040 Hb_008289_040 Hb_001250_050--Hb_008289_040 Hb_002687_180--Hb_001279_190 Hb_002687_180--Hb_004228_120 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_002007_260 Hb_002007_260 Hb_001246_130--Hb_002007_260 Hb_030982_010 Hb_030982_010 Hb_001246_130--Hb_030982_010 Hb_006120_050 Hb_006120_050 Hb_001246_130--Hb_006120_050 Hb_000054_040 Hb_000054_040 Hb_001246_130--Hb_000054_040 Hb_001246_130--Hb_002552_040 Hb_023344_140 Hb_023344_140 Hb_000317_110--Hb_023344_140 Hb_000317_110--Hb_002687_180 Hb_000034_110 Hb_000034_110 Hb_000317_110--Hb_000034_110 Hb_005305_130 Hb_005305_130 Hb_000317_110--Hb_005305_130 Hb_000046_600 Hb_000046_600 Hb_000317_110--Hb_000046_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42693 6.18993 9.51469 9.551 4.51345 3.5584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01878 2.66698 1.85974 5.88175 6.7464

CAGE analysis