Hb_000317_110

Information

Type -
Description -
Location Contig317: 73184-85951
Sequence    

Annotation

kegg
ID rcu:RCOM_1176390
description Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative (EC:1.6.5.3)
nr
ID XP_012088356.1
description PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID M1BYJ7
description External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum GN=NDB1 PE=3 SV=1
trembl
ID A0A067JJP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25848 PE=4 SV=1
Gene Ontology
ID GO:0005758
description external alternative nad h-ubiquinone oxidoreductase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33358: 73970-74216 , PASA_asmbl_33359: 73198-74663 , PASA_asmbl_33360: 74679-76717 , PASA_asmbl_33361: 76720-78720 , PASA_asmbl_33362: 80524-80895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_110 0.0 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_023344_140 0.0699592756 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
3 Hb_002687_180 0.0785675312 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
4 Hb_000034_110 0.0806837361 - - sentrin/sumo-specific protease, putative [Ricinus communis]
5 Hb_004724_390 0.0807152744 - - PREDICTED: nicalin-1-like [Populus euphratica]
6 Hb_005305_130 0.0814971114 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
7 Hb_000046_600 0.0815295922 - - PREDICTED: cullin-1-like [Jatropha curcas]
8 Hb_002045_170 0.0832909903 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
9 Hb_005741_040 0.0843214247 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
10 Hb_001279_020 0.0855096225 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
11 Hb_001159_060 0.0858240626 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
12 Hb_006846_170 0.0892947186 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
13 Hb_005403_010 0.0894641217 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
14 Hb_002249_020 0.0901435017 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
15 Hb_013726_050 0.0902609721 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
16 Hb_006120_050 0.0945537305 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
17 Hb_000406_210 0.0954379264 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
18 Hb_009158_060 0.0957454949 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
19 Hb_001414_010 0.0965864071 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
20 Hb_001246_130 0.0974044387 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000317_110 Hb_000317_110 Hb_023344_140 Hb_023344_140 Hb_000317_110--Hb_023344_140 Hb_002687_180 Hb_002687_180 Hb_000317_110--Hb_002687_180 Hb_000034_110 Hb_000034_110 Hb_000317_110--Hb_000034_110 Hb_004724_390 Hb_004724_390 Hb_000317_110--Hb_004724_390 Hb_005305_130 Hb_005305_130 Hb_000317_110--Hb_005305_130 Hb_000046_600 Hb_000046_600 Hb_000317_110--Hb_000046_600 Hb_170077_010 Hb_170077_010 Hb_023344_140--Hb_170077_010 Hb_023344_140--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_023344_140--Hb_005333_140 Hb_005403_010 Hb_005403_010 Hb_023344_140--Hb_005403_010 Hb_000358_220 Hb_000358_220 Hb_023344_140--Hb_000358_220 Hb_000996_020 Hb_000996_020 Hb_023344_140--Hb_000996_020 Hb_001279_190 Hb_001279_190 Hb_002687_180--Hb_001279_190 Hb_004228_120 Hb_004228_120 Hb_002687_180--Hb_004228_120 Hb_001250_050 Hb_001250_050 Hb_002687_180--Hb_001250_050 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_000270_700 Hb_000270_700 Hb_000034_110--Hb_000270_700 Hb_000956_040 Hb_000956_040 Hb_000034_110--Hb_000956_040 Hb_000260_760 Hb_000260_760 Hb_000034_110--Hb_000260_760 Hb_009178_010 Hb_009178_010 Hb_000034_110--Hb_009178_010 Hb_002686_410 Hb_002686_410 Hb_000034_110--Hb_002686_410 Hb_000034_110--Hb_005403_010 Hb_002045_170 Hb_002045_170 Hb_004724_390--Hb_002045_170 Hb_004724_390--Hb_002687_180 Hb_000497_190 Hb_000497_190 Hb_004724_390--Hb_000497_190 Hb_004724_390--Hb_004228_120 Hb_012760_030 Hb_012760_030 Hb_004724_390--Hb_012760_030 Hb_009158_060 Hb_009158_060 Hb_005305_130--Hb_009158_060 Hb_003661_010 Hb_003661_010 Hb_005305_130--Hb_003661_010 Hb_160608_010 Hb_160608_010 Hb_005305_130--Hb_160608_010 Hb_001414_010 Hb_001414_010 Hb_005305_130--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_005305_130--Hb_029552_020 Hb_001159_060 Hb_001159_060 Hb_005305_130--Hb_001159_060 Hb_000046_600--Hb_005403_010 Hb_000529_060 Hb_000529_060 Hb_000046_600--Hb_000529_060 Hb_000046_600--Hb_005333_140 Hb_000994_020 Hb_000994_020 Hb_000046_600--Hb_000994_020 Hb_000977_300 Hb_000977_300 Hb_000046_600--Hb_000977_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34534 6.00083 9.03285 7.13566 3.52944 3.22033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35081 1.41401 2.95994 4.9368 6.00363

CAGE analysis