Hb_000954_010

Information

Type -
Description -
Location Contig954: 47320-50175
Sequence    

Annotation

kegg
ID rcu:RCOM_1175990
description Peroxisomal membrane protein, putative
nr
ID XP_012088332.1
description PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
swissprot
ID Q2KIY1
description Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3
trembl
ID A0A067JXB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25826 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein sym1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63481: 47324-50470 , PASA_asmbl_63482: 48057-48280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000954_010 0.0 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
2 Hb_000103_290 0.0603674909 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
3 Hb_000702_090 0.0664740732 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
4 Hb_016172_030 0.0685718193 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
5 Hb_000336_020 0.0697545315 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
6 Hb_002045_170 0.0718230961 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
7 Hb_060980_010 0.0718406598 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
8 Hb_086063_020 0.0749898894 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
9 Hb_027506_010 0.0750655671 - - PREDICTED: cullin-4 [Jatropha curcas]
10 Hb_044486_020 0.0790721152 - - CASTOR protein [Glycine max]
11 Hb_000406_210 0.0795908 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
12 Hb_005730_010 0.0800381465 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
13 Hb_000020_160 0.080059423 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
14 Hb_021165_010 0.0830440835 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
15 Hb_008397_010 0.0830601801 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
16 Hb_000359_190 0.0848658214 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
17 Hb_000173_190 0.0861995204 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000358_100 0.0862041601 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
19 Hb_000661_120 0.0871915887 - - cap binding protein, putative [Ricinus communis]
20 Hb_003913_020 0.0871937284 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]

Gene co-expression network

sample Hb_000954_010 Hb_000954_010 Hb_000103_290 Hb_000103_290 Hb_000954_010--Hb_000103_290 Hb_000702_090 Hb_000702_090 Hb_000954_010--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_000954_010--Hb_016172_030 Hb_000336_020 Hb_000336_020 Hb_000954_010--Hb_000336_020 Hb_002045_170 Hb_002045_170 Hb_000954_010--Hb_002045_170 Hb_060980_010 Hb_060980_010 Hb_000954_010--Hb_060980_010 Hb_048476_080 Hb_048476_080 Hb_000103_290--Hb_048476_080 Hb_000103_290--Hb_016172_030 Hb_000103_290--Hb_060980_010 Hb_027506_010 Hb_027506_010 Hb_000103_290--Hb_027506_010 Hb_024650_080 Hb_024650_080 Hb_000103_290--Hb_024650_080 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_007248_030 Hb_007248_030 Hb_000702_090--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_000702_090--Hb_023313_040 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_004586_060 Hb_004586_060 Hb_000702_090--Hb_004586_060 Hb_000702_090--Hb_016172_030 Hb_016172_030--Hb_060980_010 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_016172_030--Hb_024650_080 Hb_000996_020 Hb_000996_020 Hb_000336_020--Hb_000996_020 Hb_008397_010 Hb_008397_010 Hb_000336_020--Hb_008397_010 Hb_000529_060 Hb_000529_060 Hb_000336_020--Hb_000529_060 Hb_001856_180 Hb_001856_180 Hb_000336_020--Hb_001856_180 Hb_012055_110 Hb_012055_110 Hb_000336_020--Hb_012055_110 Hb_002849_170 Hb_002849_170 Hb_000336_020--Hb_002849_170 Hb_004724_390 Hb_004724_390 Hb_002045_170--Hb_004724_390 Hb_001250_050 Hb_001250_050 Hb_002045_170--Hb_001250_050 Hb_002687_180 Hb_002687_180 Hb_002045_170--Hb_002687_180 Hb_001246_130 Hb_001246_130 Hb_002045_170--Hb_001246_130 Hb_000317_110 Hb_000317_110 Hb_002045_170--Hb_000317_110 Hb_060980_010--Hb_027506_010 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.69107 12.5897 14.4884 15.867 11.0808 6.60974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.95494 6.48781 4.45153 13.1218 12.4166

CAGE analysis