Hb_000154_050

Information

Type -
Description -
Location Contig154: 92191-102543
Sequence    

Annotation

kegg
ID rcu:RCOM_1043060
description CMP-sialic acid transporter, putative
nr
ID XP_002523445.1
description CMP-sialic acid transporter, putative [Ricinus communis]
swissprot
ID F4JN00
description CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1
trembl
ID B9SBS6
description CMP-sialic acid transporter, putative OS=Ricinus communis GN=RCOM_1043060 PE=4 SV=1
Gene Ontology
ID GO:0000139
description cmp-sialic acid transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13246: 92231-94345 , PASA_asmbl_13247: 94960-95057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000154_050 0.0 - - CMP-sialic acid transporter, putative [Ricinus communis]
2 Hb_005064_010 0.0671950515 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
3 Hb_006588_160 0.0721608378 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_004013_030 0.0739043191 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
5 Hb_002837_040 0.0768489688 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
6 Hb_002871_140 0.0817214628 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
7 Hb_000261_210 0.0861645673 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_004064_040 0.0872743215 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
9 Hb_000645_070 0.0880581465 - - aldehyde dehydrogenase, putative [Ricinus communis]
10 Hb_000056_160 0.0894609271 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
11 Hb_001002_060 0.0909539311 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
12 Hb_001450_020 0.0921769677 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
13 Hb_000497_190 0.0928356314 - - sterol isomerase, putative [Ricinus communis]
14 Hb_000331_140 0.0938764148 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
15 Hb_004096_060 0.094704496 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
16 Hb_016448_010 0.0959584268 - - Protein MYG1, putative [Ricinus communis]
17 Hb_000503_020 0.0994696707 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
18 Hb_004032_370 0.0995361604 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
19 Hb_000903_010 0.1008732493 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
20 Hb_000001_090 0.1027782042 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]

Gene co-expression network

sample Hb_000154_050 Hb_000154_050 Hb_005064_010 Hb_005064_010 Hb_000154_050--Hb_005064_010 Hb_006588_160 Hb_006588_160 Hb_000154_050--Hb_006588_160 Hb_004013_030 Hb_004013_030 Hb_000154_050--Hb_004013_030 Hb_002837_040 Hb_002837_040 Hb_000154_050--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000154_050--Hb_002871_140 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_004064_040 Hb_004064_040 Hb_005064_010--Hb_004064_040 Hb_001002_060 Hb_001002_060 Hb_005064_010--Hb_001002_060 Hb_001227_120 Hb_001227_120 Hb_005064_010--Hb_001227_120 Hb_003540_050 Hb_003540_050 Hb_005064_010--Hb_003540_050 Hb_000160_070 Hb_000160_070 Hb_005064_010--Hb_000160_070 Hb_006588_160--Hb_004013_030 Hb_000001_090 Hb_000001_090 Hb_006588_160--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_006588_160--Hb_001053_080 Hb_006588_160--Hb_002837_040 Hb_001450_020 Hb_001450_020 Hb_006588_160--Hb_001450_020 Hb_006816_190 Hb_006816_190 Hb_004013_030--Hb_006816_190 Hb_004013_030--Hb_001450_020 Hb_000331_140 Hb_000331_140 Hb_004013_030--Hb_000331_140 Hb_074399_010 Hb_074399_010 Hb_004013_030--Hb_074399_010 Hb_000645_070 Hb_000645_070 Hb_002837_040--Hb_000645_070 Hb_000903_010 Hb_000903_010 Hb_002837_040--Hb_000903_010 Hb_002749_080 Hb_002749_080 Hb_002837_040--Hb_002749_080 Hb_003058_100 Hb_003058_100 Hb_002837_040--Hb_003058_100 Hb_002871_140--Hb_000903_010 Hb_002871_140--Hb_002749_080 Hb_002871_140--Hb_005064_010 Hb_002871_140--Hb_002837_040 Hb_033642_040 Hb_033642_040 Hb_002871_140--Hb_033642_040 Hb_002473_050 Hb_002473_050 Hb_000261_210--Hb_002473_050 Hb_000054_040 Hb_000054_040 Hb_000261_210--Hb_000054_040 Hb_000261_210--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_000261_210--Hb_025668_010 Hb_002351_030 Hb_002351_030 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83085 2.76328 10.1567 8.72232 4.36123 4.51572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8096 1.99727 1.79502 3.87451 5.20823

CAGE analysis