Hb_000645_070

Information

Type -
Description -
Location Contig645: 72955-78921
Sequence    

Annotation

kegg
ID rcu:RCOM_1000480
description aldehyde dehydrogenase, putative (EC:1.2.1.3)
nr
ID XP_002519219.1
description aldehyde dehydrogenase, putative [Ricinus communis]
swissprot
ID Q0WSF1
description Aldehyde dehydrogenase 22A1 OS=Arabidopsis thaliana GN=ALDH22A1 PE=2 SV=2
trembl
ID B9RZQ0
description Aldehyde dehydrogenase, putative OS=Ricinus communis GN=RCOM_1000480 PE=3 SV=1
Gene Ontology
ID GO:0005783
description aldehyde dehydrogenase 22a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52255: 72955-78767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_070 0.0 - - aldehyde dehydrogenase, putative [Ricinus communis]
2 Hb_002837_040 0.0480476215 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
3 Hb_003058_100 0.0833220333 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
4 Hb_000154_050 0.0880581465 - - CMP-sialic acid transporter, putative [Ricinus communis]
5 Hb_002749_080 0.0938451826 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000903_010 0.0951528381 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
7 Hb_002871_140 0.0971107076 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
8 Hb_006816_190 0.0971861639 - - calreticulin family protein [Populus trichocarpa]
9 Hb_006588_160 0.1051076041 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_004013_030 0.1085672405 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
11 Hb_010172_010 0.1098919869 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
12 Hb_014361_060 0.1121587966 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
13 Hb_000116_190 0.1149421011 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000001_090 0.1151109092 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
15 Hb_022693_130 0.1156211628 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_006006_060 0.1165695043 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
17 Hb_004064_040 0.1166312221 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
18 Hb_005064_010 0.1180995602 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
19 Hb_000056_160 0.1188192012 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
20 Hb_004907_090 0.1191906405 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000645_070 Hb_000645_070 Hb_002837_040 Hb_002837_040 Hb_000645_070--Hb_002837_040 Hb_003058_100 Hb_003058_100 Hb_000645_070--Hb_003058_100 Hb_000154_050 Hb_000154_050 Hb_000645_070--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_000645_070--Hb_002749_080 Hb_000903_010 Hb_000903_010 Hb_000645_070--Hb_000903_010 Hb_002871_140 Hb_002871_140 Hb_000645_070--Hb_002871_140 Hb_002837_040--Hb_000903_010 Hb_002837_040--Hb_000154_050 Hb_002837_040--Hb_002749_080 Hb_002837_040--Hb_003058_100 Hb_006588_160 Hb_006588_160 Hb_002837_040--Hb_006588_160 Hb_019654_020 Hb_019654_020 Hb_003058_100--Hb_019654_020 Hb_022693_130 Hb_022693_130 Hb_003058_100--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_003058_100--Hb_000645_180 Hb_010172_010 Hb_010172_010 Hb_003058_100--Hb_010172_010 Hb_005064_010 Hb_005064_010 Hb_000154_050--Hb_005064_010 Hb_000154_050--Hb_006588_160 Hb_004013_030 Hb_004013_030 Hb_000154_050--Hb_004013_030 Hb_000154_050--Hb_002871_140 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_000787_060 Hb_000787_060 Hb_002749_080--Hb_000787_060 Hb_002749_080--Hb_000903_010 Hb_002749_080--Hb_002871_140 Hb_000579_070 Hb_000579_070 Hb_002749_080--Hb_000579_070 Hb_000056_160 Hb_000056_160 Hb_002749_080--Hb_000056_160 Hb_004064_040 Hb_004064_040 Hb_000903_010--Hb_004064_040 Hb_000903_010--Hb_002871_140 Hb_000903_010--Hb_000787_060 Hb_001002_060 Hb_001002_060 Hb_000903_010--Hb_001002_060 Hb_002871_140--Hb_005064_010 Hb_002871_140--Hb_002837_040 Hb_033642_040 Hb_033642_040 Hb_002871_140--Hb_033642_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.40287 2.49263 14.3928 14.8444 8.0387 6.03478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06916 2.76436 2.42797 5.87836 11.3748

CAGE analysis