Hb_000579_070

Information

Type -
Description -
Location Contig579: 120008-121774
Sequence    

Annotation

kegg
ID zma:100191545
description IDP1634; LOC100191545
nr
ID KDO84662.1
description hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
swissprot
ID Q81ST7
description N-acetyl-alpha-D-glucosaminyl L-malate synthase OS=Bacillus anthracis GN=bshA PE=1 SV=1
trembl
ID A0A067HA58
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0119542mg PE=4 SV=1
Gene Ontology
ID GO:0004378
description lipopolysaccharide core biosynthesis mannosyltransferase lpsb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49769: 106910-121825 , PASA_asmbl_49770: 106847-121825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_070 0.0 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
2 Hb_000056_160 0.0596656944 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
3 Hb_003687_210 0.0777452869 - - PREDICTED: malate dehydrogenase [Populus euphratica]
4 Hb_002749_080 0.0877528908 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004586_150 0.0901348071 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
6 Hb_000261_210 0.0955415667 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_000787_060 0.0958723014 - - thioredoxin domain-containing protein, putative [Ricinus communis]
8 Hb_004096_060 0.0983019228 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
9 Hb_004064_040 0.0984748783 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
10 Hb_016347_020 0.0997360022 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
11 Hb_001002_060 0.1003522692 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
12 Hb_000963_040 0.1018709848 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
13 Hb_000737_030 0.1033655922 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
14 Hb_000120_550 0.1041452265 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
15 Hb_033642_040 0.1058888368 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
16 Hb_002391_360 0.1082877652 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
17 Hb_000154_050 0.1084560187 - - CMP-sialic acid transporter, putative [Ricinus communis]
18 Hb_000163_090 0.1096316764 - - gamma-tubulin complex component, putative [Ricinus communis]
19 Hb_005064_010 0.109660841 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
20 Hb_000579_060 0.1102058297 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000579_070 Hb_000579_070 Hb_000056_160 Hb_000056_160 Hb_000579_070--Hb_000056_160 Hb_003687_210 Hb_003687_210 Hb_000579_070--Hb_003687_210 Hb_002749_080 Hb_002749_080 Hb_000579_070--Hb_002749_080 Hb_004586_150 Hb_004586_150 Hb_000579_070--Hb_004586_150 Hb_000261_210 Hb_000261_210 Hb_000579_070--Hb_000261_210 Hb_000787_060 Hb_000787_060 Hb_000579_070--Hb_000787_060 Hb_000056_160--Hb_003687_210 Hb_000056_160--Hb_000261_210 Hb_004064_040 Hb_004064_040 Hb_000056_160--Hb_004064_040 Hb_000154_050 Hb_000154_050 Hb_000056_160--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_000056_160--Hb_001002_060 Hb_000579_060 Hb_000579_060 Hb_003687_210--Hb_000579_060 Hb_003104_040 Hb_003104_040 Hb_003687_210--Hb_003104_040 Hb_013726_080 Hb_013726_080 Hb_003687_210--Hb_013726_080 Hb_004096_060 Hb_004096_060 Hb_003687_210--Hb_004096_060 Hb_002837_040 Hb_002837_040 Hb_002749_080--Hb_002837_040 Hb_002749_080--Hb_000787_060 Hb_000903_010 Hb_000903_010 Hb_002749_080--Hb_000903_010 Hb_002871_140 Hb_002871_140 Hb_002749_080--Hb_002871_140 Hb_002749_080--Hb_000056_160 Hb_000184_240 Hb_000184_240 Hb_004586_150--Hb_000184_240 Hb_002676_120 Hb_002676_120 Hb_004586_150--Hb_002676_120 Hb_000963_040 Hb_000963_040 Hb_004586_150--Hb_000963_040 Hb_004137_100 Hb_004137_100 Hb_004586_150--Hb_004137_100 Hb_004586_150--Hb_000261_210 Hb_002473_050 Hb_002473_050 Hb_000261_210--Hb_002473_050 Hb_000054_040 Hb_000054_040 Hb_000261_210--Hb_000054_040 Hb_000261_210--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_000261_210--Hb_025668_010 Hb_002351_030 Hb_002351_030 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090 Hb_000787_060--Hb_001002_060 Hb_000163_090 Hb_000163_090 Hb_000787_060--Hb_000163_090 Hb_000787_060--Hb_000903_010 Hb_000007_390 Hb_000007_390 Hb_000787_060--Hb_000007_390 Hb_000184_070 Hb_000184_070 Hb_000787_060--Hb_000184_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5111 5.36323 19.2633 17.7207 14.1553 11.4471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.55294 5.42568 4.1239 15.0124 9.26672

CAGE analysis