Hb_000007_390

Information

Type -
Description -
Location Contig7: 365333-370403
Sequence    

Annotation

kegg
ID rcu:RCOM_1464460
description catalytic, putative
nr
ID KDP29329.1
description hypothetical protein JCGZ_18250 [Jatropha curcas]
swissprot
ID Q1LUI2
description HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1
trembl
ID A0A067KBY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18250 PE=4 SV=1
Gene Ontology
ID GO:0009507
description hd domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54765: 365412-370396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_390 0.0 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
2 Hb_000270_680 0.0571440738 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
3 Hb_003943_050 0.066644572 - - phosphoglucomutase, putative [Ricinus communis]
4 Hb_000110_310 0.0752514251 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
5 Hb_000787_060 0.0852886501 - - thioredoxin domain-containing protein, putative [Ricinus communis]
6 Hb_001268_240 0.0925867618 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
7 Hb_009898_050 0.093569193 - - PREDICTED: beta-taxilin [Jatropha curcas]
8 Hb_000579_120 0.0943413546 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
9 Hb_001188_070 0.0958762448 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
10 Hb_001205_250 0.0961659769 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
11 Hb_006153_070 0.0968029818 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
12 Hb_107879_010 0.0993595824 - - phosphoglycerate mutase, putative [Ricinus communis]
13 Hb_000245_220 0.1006603382 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
14 Hb_011618_050 0.1008084831 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
15 Hb_000890_130 0.1016269359 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
16 Hb_007831_010 0.1019252144 - - PREDICTED: oligoribonuclease [Vitis vinifera]
17 Hb_000136_110 0.1024444756 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
18 Hb_000297_160 0.103725996 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
19 Hb_000058_130 0.1042438008 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
20 Hb_001188_060 0.1055044703 - - -

Gene co-expression network

sample Hb_000007_390 Hb_000007_390 Hb_000270_680 Hb_000270_680 Hb_000007_390--Hb_000270_680 Hb_003943_050 Hb_003943_050 Hb_000007_390--Hb_003943_050 Hb_000110_310 Hb_000110_310 Hb_000007_390--Hb_000110_310 Hb_000787_060 Hb_000787_060 Hb_000007_390--Hb_000787_060 Hb_001268_240 Hb_001268_240 Hb_000007_390--Hb_001268_240 Hb_009898_050 Hb_009898_050 Hb_000007_390--Hb_009898_050 Hb_000297_160 Hb_000297_160 Hb_000270_680--Hb_000297_160 Hb_000270_680--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_000270_680--Hb_107879_010 Hb_000270_680--Hb_003943_050 Hb_001472_100 Hb_001472_100 Hb_000270_680--Hb_001472_100 Hb_003119_090 Hb_003119_090 Hb_003943_050--Hb_003119_090 Hb_001186_090 Hb_001186_090 Hb_003943_050--Hb_001186_090 Hb_007007_040 Hb_007007_040 Hb_003943_050--Hb_007007_040 Hb_000737_030 Hb_000737_030 Hb_003943_050--Hb_000737_030 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_000110_310--Hb_009898_050 Hb_000579_120 Hb_000579_120 Hb_000110_310--Hb_000579_120 Hb_000110_310--Hb_001472_100 Hb_000110_310--Hb_001268_240 Hb_001002_060 Hb_001002_060 Hb_000787_060--Hb_001002_060 Hb_000163_090 Hb_000163_090 Hb_000787_060--Hb_000163_090 Hb_000903_010 Hb_000903_010 Hb_000787_060--Hb_000903_010 Hb_002749_080 Hb_002749_080 Hb_000787_060--Hb_002749_080 Hb_000184_070 Hb_000184_070 Hb_000787_060--Hb_000184_070 Hb_000417_130 Hb_000417_130 Hb_001268_240--Hb_000417_130 Hb_001357_350 Hb_001357_350 Hb_001268_240--Hb_001357_350 Hb_000640_170 Hb_000640_170 Hb_001268_240--Hb_000640_170 Hb_001318_280 Hb_001318_280 Hb_001268_240--Hb_001318_280 Hb_001268_240--Hb_009898_050 Hb_172632_100 Hb_172632_100 Hb_001268_240--Hb_172632_100 Hb_009898_050--Hb_006153_070 Hb_008616_050 Hb_008616_050 Hb_009898_050--Hb_008616_050 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_009898_050--Hb_000640_170 Hb_009898_050--Hb_000579_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.57 2.63534 16.6313 12.1738 8.86102 9.39811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.11717 8.49563 6.33632 10.4555 9.2495

CAGE analysis