Hb_001186_090

Information

Type -
Description -
Location Contig1186: 64997-67488
Sequence    

Annotation

kegg
ID rcu:RCOM_0755870
description nascent polypeptide associated complex alpha subunit, putative (EC:3.6.3.8)
nr
ID XP_012080590.1
description PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
swissprot
ID Q94JX9
description Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2
trembl
ID A0A067K457
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15519 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nascent polypeptide-associated complex subunit alpha-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05510: 65039-67488 , PASA_asmbl_05511: 66914-67470
cDNA
(Sanger)
(ID:Location)		 016_N19.ab1: 65320-67488 , 030_D12.ab1: 65456-67488

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001186_090 0.0 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
2 Hb_000331_110 0.0676286764 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
3 Hb_000260_680 0.0722129051 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
4 Hb_003943_050 0.0749498884 - - phosphoglucomutase, putative [Ricinus communis]
5 Hb_003159_140 0.0764307009 - - conserved hypothetical protein [Ricinus communis]
6 Hb_022132_050 0.077130972 - - GTP binding protein, putative [Ricinus communis]
7 Hb_002119_080 0.0777438394 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
8 Hb_000789_320 0.0785340038 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
9 Hb_000245_220 0.0786675477 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
10 Hb_001153_210 0.0808556982 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
11 Hb_008642_040 0.0814957132 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
12 Hb_000866_310 0.081516203 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
13 Hb_003579_050 0.0832393517 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
14 Hb_007441_020 0.0841072056 - - Rab6 [Hevea brasiliensis]
15 Hb_000005_220 0.0867594566 - - DNA ligase 1, partial [Glycine soja]
16 Hb_002110_230 0.0876927713 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_000107_030 0.0877057405 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005144_090 0.0882304485 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
19 Hb_004122_040 0.0883646125 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
20 Hb_005779_010 0.0883709905 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_001186_090 Hb_001186_090 Hb_000331_110 Hb_000331_110 Hb_001186_090--Hb_000331_110 Hb_000260_680 Hb_000260_680 Hb_001186_090--Hb_000260_680 Hb_003943_050 Hb_003943_050 Hb_001186_090--Hb_003943_050 Hb_003159_140 Hb_003159_140 Hb_001186_090--Hb_003159_140 Hb_022132_050 Hb_022132_050 Hb_001186_090--Hb_022132_050 Hb_002119_080 Hb_002119_080 Hb_001186_090--Hb_002119_080 Hb_079526_030 Hb_079526_030 Hb_000331_110--Hb_079526_030 Hb_000331_110--Hb_000260_680 Hb_003878_110 Hb_003878_110 Hb_000331_110--Hb_003878_110 Hb_001089_110 Hb_001089_110 Hb_000331_110--Hb_001089_110 Hb_001821_160 Hb_001821_160 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_001776_060 Hb_001776_060 Hb_000260_680--Hb_001776_060 Hb_002217_110 Hb_002217_110 Hb_000260_680--Hb_002217_110 Hb_000260_680--Hb_079526_030 Hb_001153_210 Hb_001153_210 Hb_000260_680--Hb_001153_210 Hb_005779_010 Hb_005779_010 Hb_000260_680--Hb_005779_010 Hb_000007_390 Hb_000007_390 Hb_003943_050--Hb_000007_390 Hb_003119_090 Hb_003119_090 Hb_003943_050--Hb_003119_090 Hb_000270_680 Hb_000270_680 Hb_003943_050--Hb_000270_680 Hb_007007_040 Hb_007007_040 Hb_003943_050--Hb_007007_040 Hb_000737_030 Hb_000737_030 Hb_003943_050--Hb_000737_030 Hb_001040_100 Hb_001040_100 Hb_003159_140--Hb_001040_100 Hb_000329_800 Hb_000329_800 Hb_003159_140--Hb_000329_800 Hb_005542_130 Hb_005542_130 Hb_003159_140--Hb_005542_130 Hb_002889_010 Hb_002889_010 Hb_003159_140--Hb_002889_010 Hb_003159_140--Hb_001153_210 Hb_000035_470 Hb_000035_470 Hb_003159_140--Hb_000035_470 Hb_073973_130 Hb_073973_130 Hb_022132_050--Hb_073973_130 Hb_002872_030 Hb_002872_030 Hb_022132_050--Hb_002872_030 Hb_000392_230 Hb_000392_230 Hb_022132_050--Hb_000392_230 Hb_006588_070 Hb_006588_070 Hb_022132_050--Hb_006588_070 Hb_000649_230 Hb_000649_230 Hb_022132_050--Hb_000649_230 Hb_027428_010 Hb_027428_010 Hb_022132_050--Hb_027428_010 Hb_004122_040 Hb_004122_040 Hb_002119_080--Hb_004122_040 Hb_000331_060 Hb_000331_060 Hb_002119_080--Hb_000331_060 Hb_002119_080--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_002119_080--Hb_000107_190 Hb_002119_080--Hb_022132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
160.751 90.4186 251.143 118.161 142.873 175.717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.904 163.44 70.768 139.604 117.184

CAGE analysis