Hb_003943_050

Information

Type -
Description -
Location Contig3943: 46450-50704
Sequence    

Annotation

kegg
ID rcu:RCOM_0519550
description phosphoglucomutase, putative (EC:5.4.2.3)
nr
ID XP_002528770.1
description phosphoglucomutase, putative [Ricinus communis]
swissprot
ID P57750
description Phosphoacetylglucosamine mutase OS=Arabidopsis thaliana GN=DRT101 PE=1 SV=1
trembl
ID B9SS01
description Phosphoglucomutase, putative OS=Ricinus communis GN=RCOM_0519550 PE=4 SV=1
Gene Ontology
ID GO:0004610
description phosphoacetylglucosamine mutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39481: 46516-50694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003943_050 0.0 - - phosphoglucomutase, putative [Ricinus communis]
2 Hb_000007_390 0.066644572 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
3 Hb_003119_090 0.0679429266 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
4 Hb_000270_680 0.0714733846 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
5 Hb_001186_090 0.0749498884 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
6 Hb_007007_040 0.0873921683 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_000737_030 0.0904687187 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
8 Hb_002272_050 0.0908050575 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
9 Hb_000297_160 0.0910088113 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
10 Hb_002889_010 0.0923103723 - - ubx domain-containing, putative [Ricinus communis]
11 Hb_011618_050 0.0928273697 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
12 Hb_000776_100 0.0932670314 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
13 Hb_001959_110 0.09445456 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
14 Hb_000963_040 0.0951922995 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
15 Hb_000136_110 0.0954800645 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
16 Hb_000751_030 0.0962359546 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
17 Hb_007831_010 0.0965515946 - - PREDICTED: oligoribonuclease [Vitis vinifera]
18 Hb_005144_090 0.0966193464 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
19 Hb_000875_080 0.0967771012 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
20 Hb_000373_080 0.0978473268 - - PREDICTED: serine decarboxylase [Jatropha curcas]

Gene co-expression network

sample Hb_003943_050 Hb_003943_050 Hb_000007_390 Hb_000007_390 Hb_003943_050--Hb_000007_390 Hb_003119_090 Hb_003119_090 Hb_003943_050--Hb_003119_090 Hb_000270_680 Hb_000270_680 Hb_003943_050--Hb_000270_680 Hb_001186_090 Hb_001186_090 Hb_003943_050--Hb_001186_090 Hb_007007_040 Hb_007007_040 Hb_003943_050--Hb_007007_040 Hb_000737_030 Hb_000737_030 Hb_003943_050--Hb_000737_030 Hb_000007_390--Hb_000270_680 Hb_000110_310 Hb_000110_310 Hb_000007_390--Hb_000110_310 Hb_000787_060 Hb_000787_060 Hb_000007_390--Hb_000787_060 Hb_001268_240 Hb_001268_240 Hb_000007_390--Hb_001268_240 Hb_009898_050 Hb_009898_050 Hb_000007_390--Hb_009898_050 Hb_003119_090--Hb_007007_040 Hb_003760_030 Hb_003760_030 Hb_003119_090--Hb_003760_030 Hb_023313_040 Hb_023313_040 Hb_003119_090--Hb_023313_040 Hb_001501_080 Hb_001501_080 Hb_003119_090--Hb_001501_080 Hb_030982_030 Hb_030982_030 Hb_003119_090--Hb_030982_030 Hb_000297_160 Hb_000297_160 Hb_000270_680--Hb_000297_160 Hb_000270_680--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_000270_680--Hb_107879_010 Hb_001472_100 Hb_001472_100 Hb_000270_680--Hb_001472_100 Hb_000331_110 Hb_000331_110 Hb_001186_090--Hb_000331_110 Hb_000260_680 Hb_000260_680 Hb_001186_090--Hb_000260_680 Hb_003159_140 Hb_003159_140 Hb_001186_090--Hb_003159_140 Hb_022132_050 Hb_022132_050 Hb_001186_090--Hb_022132_050 Hb_002119_080 Hb_002119_080 Hb_001186_090--Hb_002119_080 Hb_000019_190 Hb_000019_190 Hb_007007_040--Hb_000019_190 Hb_000751_030 Hb_000751_030 Hb_007007_040--Hb_000751_030 Hb_007007_040--Hb_023313_040 Hb_007007_040--Hb_003760_030 Hb_000006_010 Hb_000006_010 Hb_007007_040--Hb_000006_010 Hb_032990_010 Hb_032990_010 Hb_000737_030--Hb_032990_010 Hb_001002_060 Hb_001002_060 Hb_000737_030--Hb_001002_060 Hb_001005_030 Hb_001005_030 Hb_000737_030--Hb_001005_030 Hb_004586_060 Hb_004586_060 Hb_000737_030--Hb_004586_060 Hb_000373_080 Hb_000373_080 Hb_000737_030--Hb_000373_080 Hb_001377_310 Hb_001377_310 Hb_000737_030--Hb_001377_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.6006 4.28525 15.0841 9.86295 7.73557 8.39865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.26014 7.07299 4.76952 8.85777 5.89536

CAGE analysis