Hb_107879_010

Information

Type -
Description -
Location Contig107879: 7921-9209
Sequence    

Annotation

kegg
ID rcu:RCOM_0601930
description phosphoglycerate mutase, putative (EC:5.4.2.1)
nr
ID XP_002522316.1
description phosphoglycerate mutase, putative [Ricinus communis]
swissprot
ID Q9SCS3
description Phosphoglycerate mutase-like protein 4 OS=Arabidopsis thaliana GN=At3g50520 PE=2 SV=1
trembl
ID B9S8J7
description Phosphoglycerate mutase, putative OS=Ricinus communis GN=RCOM_0601930 PE=4 SV=1
Gene Ontology
ID GO:0004619
description phosphoglycerate mutase-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107879_010 0.0 - - phosphoglycerate mutase, putative [Ricinus communis]
2 Hb_000227_170 0.0702190319 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_000270_680 0.0709629877 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
4 Hb_001472_100 0.0723927156 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
5 Hb_000579_120 0.077236119 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
6 Hb_000110_310 0.0782355609 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
7 Hb_003513_010 0.08128986 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
8 Hb_000012_250 0.085712255 - - hypothetical protein L484_019524 [Morus notabilis]
9 Hb_000304_070 0.0861724796 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
10 Hb_004440_020 0.0871843137 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
11 Hb_000976_120 0.0875786227 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
12 Hb_000869_020 0.0878111678 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
13 Hb_002759_190 0.088229838 - - PREDICTED: protein NLRC3 [Jatropha curcas]
14 Hb_000207_300 0.0883264472 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
15 Hb_000245_220 0.0886703575 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
16 Hb_001195_460 0.0909222483 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
17 Hb_003728_100 0.0918966853 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
18 Hb_002874_180 0.0922711349 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
19 Hb_000061_180 0.0926126372 - - exonuclease, putative [Ricinus communis]
20 Hb_005588_080 0.0934286026 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]

Gene co-expression network

sample Hb_107879_010 Hb_107879_010 Hb_000227_170 Hb_000227_170 Hb_107879_010--Hb_000227_170 Hb_000270_680 Hb_000270_680 Hb_107879_010--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_107879_010--Hb_001472_100 Hb_000579_120 Hb_000579_120 Hb_107879_010--Hb_000579_120 Hb_000110_310 Hb_000110_310 Hb_107879_010--Hb_000110_310 Hb_003513_010 Hb_003513_010 Hb_107879_010--Hb_003513_010 Hb_001935_100 Hb_001935_100 Hb_000227_170--Hb_001935_100 Hb_000025_780 Hb_000025_780 Hb_000227_170--Hb_000025_780 Hb_005494_010 Hb_005494_010 Hb_000227_170--Hb_005494_010 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070 Hb_000007_390 Hb_000007_390 Hb_000270_680--Hb_000007_390 Hb_000297_160 Hb_000297_160 Hb_000270_680--Hb_000297_160 Hb_000270_680--Hb_000110_310 Hb_003943_050 Hb_003943_050 Hb_000270_680--Hb_003943_050 Hb_000270_680--Hb_001472_100 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_001472_100--Hb_000110_310 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180 Hb_000058_130 Hb_000058_130 Hb_000579_120--Hb_000058_130 Hb_001232_190 Hb_001232_190 Hb_000579_120--Hb_001232_190 Hb_000579_120--Hb_000110_310 Hb_009898_050 Hb_009898_050 Hb_000579_120--Hb_009898_050 Hb_000579_120--Hb_000976_120 Hb_000207_150 Hb_000207_150 Hb_000579_120--Hb_000207_150 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_000110_310--Hb_009898_050 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_004052_080 Hb_004052_080 Hb_003513_010--Hb_004052_080 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_014834_150 Hb_014834_150 Hb_003513_010--Hb_014834_150 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_003861_060 Hb_003861_060 Hb_003513_010--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_003513_010--Hb_007007_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0272 6.06972 25.748 15.1838 12.7632 10.5505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4106 17.3718 10.8887 11.8346 19.8973

CAGE analysis