Hb_000025_780

Information

Type -
Description -
Location Contig25: 717131-723610
Sequence    

Annotation

kegg
ID tcc:TCM_040835
description NAD(P)-binding Rossmann-fold superfamily protein isoform 1
nr
ID XP_012088626.1
description PREDICTED: sanguinarine reductase [Jatropha curcas]
swissprot
ID Q8SKU2
description Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2
trembl
ID A0A067JWC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27128 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26178: 717138-723588 , PASA_asmbl_26180: 721289-721490 , PASA_asmbl_26181: 721745-723524
cDNA
(Sanger)
(ID:Location)		 020_P12.ab1: 719855-723588

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_780 0.0 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
2 Hb_000227_170 0.0734608997 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_000796_160 0.0741040015 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_001410_070 0.0803902051 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
5 Hb_001935_100 0.0810218802 - - structural molecule, putative [Ricinus communis]
6 Hb_007533_010 0.0888573504 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
7 Hb_005494_010 0.1051426414 - - catalytic, putative [Ricinus communis]
8 Hb_001369_610 0.1068487988 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
9 Hb_001587_180 0.1070408917 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
10 Hb_002759_190 0.1085604299 - - PREDICTED: protein NLRC3 [Jatropha curcas]
11 Hb_000487_260 0.1085908159 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
12 Hb_000300_180 0.1106272999 - - transcription initiation factor brf1, putative [Ricinus communis]
13 Hb_000304_070 0.1110425829 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
14 Hb_005539_010 0.1122476097 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
15 Hb_000059_380 0.1123853875 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
16 Hb_002876_220 0.1129792746 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
17 Hb_003747_230 0.1130086708 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
18 Hb_003029_070 0.1142829702 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_011930_020 0.116347211 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
20 Hb_001287_040 0.1174056868 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_780 Hb_000025_780 Hb_000227_170 Hb_000227_170 Hb_000025_780--Hb_000227_170 Hb_000796_160 Hb_000796_160 Hb_000025_780--Hb_000796_160 Hb_001410_070 Hb_001410_070 Hb_000025_780--Hb_001410_070 Hb_001935_100 Hb_001935_100 Hb_000025_780--Hb_001935_100 Hb_007533_010 Hb_007533_010 Hb_000025_780--Hb_007533_010 Hb_005494_010 Hb_005494_010 Hb_000025_780--Hb_005494_010 Hb_107879_010 Hb_107879_010 Hb_000227_170--Hb_107879_010 Hb_000227_170--Hb_001935_100 Hb_000227_170--Hb_005494_010 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070 Hb_000796_160--Hb_001935_100 Hb_000796_160--Hb_001410_070 Hb_000487_260 Hb_000487_260 Hb_000796_160--Hb_000487_260 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_006538_120 Hb_006538_120 Hb_001410_070--Hb_006538_120 Hb_001410_070--Hb_001935_100 Hb_009775_010 Hb_009775_010 Hb_001410_070--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_001410_070--Hb_005539_010 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_001935_100--Hb_005539_010 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_002338_020 Hb_002338_020 Hb_007533_010--Hb_002338_020 Hb_007533_010--Hb_000227_170 Hb_002542_040 Hb_002542_040 Hb_007533_010--Hb_002542_040 Hb_000181_090 Hb_000181_090 Hb_007533_010--Hb_000181_090 Hb_000424_060 Hb_000424_060 Hb_007533_010--Hb_000424_060 Hb_113853_010 Hb_113853_010 Hb_005494_010--Hb_113853_010 Hb_001623_270 Hb_001623_270 Hb_005494_010--Hb_001623_270 Hb_005494_010--Hb_005946_040 Hb_005494_010--Hb_000304_070 Hb_001109_050 Hb_001109_050 Hb_005494_010--Hb_001109_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1489 14.9978 32.7259 10.6759 14.6162 12.348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.7515 22.6477 12.3745 9.10506 32.4037

CAGE analysis