Hb_000796_160

Information

Type -
Description -
Location Contig796: 103460-105891
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011214mg
description hypothetical protein
nr
ID XP_012082940.1
description PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
swissprot
ID Q93W77
description NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1
trembl
ID A0A067K7Q6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14061 PE=4 SV=1
Gene Ontology
ID GO:0005198
description nifu-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58555: 103469-105893
cDNA
(Sanger)
(ID:Location)		 027_N01.ab1: 103852-105893 , 043_H01.ab1: 103593-105843 , 047_B20.ab1: 103623-105843

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_160 0.0 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
2 Hb_000025_780 0.0741040015 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
3 Hb_001935_100 0.0789987576 - - structural molecule, putative [Ricinus communis]
4 Hb_001410_070 0.0793113958 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
5 Hb_000487_260 0.0876368884 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
6 Hb_076778_010 0.0916738896 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
7 Hb_000230_400 0.0998026463 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000227_170 0.0998999435 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_005494_010 0.1026856333 - - catalytic, putative [Ricinus communis]
10 Hb_001369_610 0.1035746429 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
11 Hb_000349_270 0.1035921132 - - PREDICTED: uncharacterized protein ycf49 isoform X1 [Jatropha curcas]
12 Hb_001587_180 0.1039499875 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
13 Hb_019053_060 0.1062287945 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
14 Hb_001269_670 0.1072681038 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
15 Hb_005511_140 0.1110697104 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
16 Hb_001769_170 0.1112387142 - - 50S ribosomal protein L31, putative [Ricinus communis]
17 Hb_000282_080 0.112204069 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002435_100 0.1139044704 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
19 Hb_001541_050 0.1142720253 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
20 Hb_009847_030 0.1152191776 - - zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000796_160 Hb_000796_160 Hb_000025_780 Hb_000025_780 Hb_000796_160--Hb_000025_780 Hb_001935_100 Hb_001935_100 Hb_000796_160--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_000796_160--Hb_001410_070 Hb_000487_260 Hb_000487_260 Hb_000796_160--Hb_000487_260 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_000227_170 Hb_000227_170 Hb_000025_780--Hb_000227_170 Hb_000025_780--Hb_001410_070 Hb_000025_780--Hb_001935_100 Hb_007533_010 Hb_007533_010 Hb_000025_780--Hb_007533_010 Hb_005494_010 Hb_005494_010 Hb_000025_780--Hb_005494_010 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001935_100--Hb_001410_070 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_006538_120 Hb_006538_120 Hb_001410_070--Hb_006538_120 Hb_009775_010 Hb_009775_010 Hb_001410_070--Hb_009775_010 Hb_001410_070--Hb_005539_010 Hb_000811_070 Hb_000811_070 Hb_000487_260--Hb_000811_070 Hb_006846_150 Hb_006846_150 Hb_000487_260--Hb_006846_150 Hb_019053_060 Hb_019053_060 Hb_000487_260--Hb_019053_060 Hb_000487_260--Hb_001935_100 Hb_008421_020 Hb_008421_020 Hb_000487_260--Hb_008421_020 Hb_000506_110 Hb_000506_110 Hb_076778_010--Hb_000506_110 Hb_076778_010--Hb_000025_780 Hb_003462_180 Hb_003462_180 Hb_076778_010--Hb_003462_180 Hb_002435_100 Hb_002435_100 Hb_076778_010--Hb_002435_100 Hb_000023_360 Hb_000023_360 Hb_076778_010--Hb_000023_360 Hb_005588_080 Hb_005588_080 Hb_000230_400--Hb_005588_080 Hb_000375_390 Hb_000375_390 Hb_000230_400--Hb_000375_390 Hb_000292_100 Hb_000292_100 Hb_000230_400--Hb_000292_100 Hb_001623_270 Hb_001623_270 Hb_000230_400--Hb_001623_270 Hb_000059_380 Hb_000059_380 Hb_000230_400--Hb_000059_380 Hb_000035_090 Hb_000035_090 Hb_000230_400--Hb_000035_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.6459 110.611 185.66 93.4926 66.9814 73.186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.448 161.699 65.1434 44.8065 213.754

CAGE analysis