Hb_003462_180

Information

Type transcription factor
Description TF Family: GNAT
Location Contig3462: 181118-181810
Sequence    

Annotation

kegg
ID rcu:RCOM_0263630
description Tyramine N-feruloyltransferase 4/11, putative (EC:2.3.1.110)
nr
ID XP_012093286.1
description PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
swissprot
ID Q9ZV05
description L-ornithine N5-acetyltransferase NATA1 OS=Arabidopsis thaliana GN=NATA1 PE=2 SV=1
trembl
ID A0A067LIG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20075 PE=4 SV=1
Gene Ontology
ID GO:0008080
description probable acetyltransferase nata1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36122: 155583-181666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_180 0.0 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
2 Hb_000506_110 0.0786610978 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
3 Hb_000023_360 0.0860724997 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
4 Hb_001629_090 0.0972680092 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005656_170 0.1008192578 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
6 Hb_001511_090 0.1034494776 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
7 Hb_049575_010 0.1035145464 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
8 Hb_073973_090 0.1048488347 - - Aminotransferase ybdL, putative [Ricinus communis]
9 Hb_007558_090 0.1055943753 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000128_060 0.1065786351 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
11 Hb_001675_140 0.1066309904 - - hypothetical protein L484_026216 [Morus notabilis]
12 Hb_001160_100 0.1086621549 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
13 Hb_005511_140 0.1087509123 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
14 Hb_029622_120 0.1101723952 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
15 Hb_006907_060 0.111342992 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
16 Hb_001269_620 0.1114172695 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
17 Hb_000537_100 0.1116031023 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
18 Hb_000088_260 0.1132429847 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
19 Hb_000086_080 0.1167114015 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005235_070 0.1182983766 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003462_180 Hb_003462_180 Hb_000506_110 Hb_000506_110 Hb_003462_180--Hb_000506_110 Hb_000023_360 Hb_000023_360 Hb_003462_180--Hb_000023_360 Hb_001629_090 Hb_001629_090 Hb_003462_180--Hb_001629_090 Hb_005656_170 Hb_005656_170 Hb_003462_180--Hb_005656_170 Hb_001511_090 Hb_001511_090 Hb_003462_180--Hb_001511_090 Hb_049575_010 Hb_049575_010 Hb_003462_180--Hb_049575_010 Hb_002259_170 Hb_002259_170 Hb_000506_110--Hb_002259_170 Hb_000506_110--Hb_001511_090 Hb_000160_140 Hb_000160_140 Hb_000506_110--Hb_000160_140 Hb_008120_040 Hb_008120_040 Hb_000506_110--Hb_008120_040 Hb_001269_370 Hb_001269_370 Hb_000506_110--Hb_001269_370 Hb_073973_090 Hb_073973_090 Hb_000023_360--Hb_073973_090 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020 Hb_002290_030 Hb_002290_030 Hb_001629_090--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_001629_090--Hb_004375_050 Hb_000983_070 Hb_000983_070 Hb_001629_090--Hb_000983_070 Hb_001711_120 Hb_001711_120 Hb_001629_090--Hb_001711_120 Hb_002762_110 Hb_002762_110 Hb_001629_090--Hb_002762_110 Hb_005656_170--Hb_000506_110 Hb_005656_170--Hb_000023_360 Hb_027506_040 Hb_027506_040 Hb_005656_170--Hb_027506_040 Hb_005656_170--Hb_001511_090 Hb_001277_050 Hb_001277_050 Hb_005656_170--Hb_001277_050 Hb_000340_040 Hb_000340_040 Hb_001511_090--Hb_000340_040 Hb_000088_260 Hb_000088_260 Hb_001511_090--Hb_000088_260 Hb_001511_090--Hb_002259_170 Hb_001008_130 Hb_001008_130 Hb_001511_090--Hb_001008_130 Hb_001511_090--Hb_000023_360 Hb_000169_020 Hb_000169_020 Hb_001511_090--Hb_000169_020 Hb_049575_010--Hb_073973_090 Hb_000330_090 Hb_000330_090 Hb_049575_010--Hb_000330_090 Hb_007904_230 Hb_007904_230 Hb_049575_010--Hb_007904_230 Hb_001269_620 Hb_001269_620 Hb_049575_010--Hb_001269_620 Hb_007558_090 Hb_007558_090 Hb_049575_010--Hb_007558_090 Hb_000364_050 Hb_000364_050 Hb_049575_010--Hb_000364_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0616 12.9323 21.7951 11.7913 3.84979 3.61215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.12264 15.7378 6.89737 7.16754 23.6974

CAGE analysis