Hb_001711_120

Information

Type -
Description -
Location Contig1711: 137493-142285
Sequence    

Annotation

kegg
ID pop:POPTR_0003s10230g
description POPTRDRAFT_554124; hypothetical protein
nr
ID XP_012070506.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
swissprot
ID Q94B60
description ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1
trembl
ID A0A067L6R4
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_02774 PE=3 SV=1
Gene Ontology
ID GO:0004252
description atp-dependent clp protease proteolytic subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15992: 137799-142378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_120 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
2 Hb_000510_030 0.0905123744 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
3 Hb_002053_010 0.0917626049 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
4 Hb_001629_090 0.0927980046 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000983_070 0.0952202502 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000392_550 0.0974304048 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_001369_790 0.0984762706 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
8 Hb_000622_290 0.0988676571 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
9 Hb_001789_200 0.1017513891 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
10 Hb_002762_110 0.1036113676 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000388_060 0.1041776465 - - fructokinase [Manihot esculenta]
12 Hb_009780_050 0.1054841096 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
13 Hb_008695_200 0.107764321 - - Protein grpE, putative [Ricinus communis]
14 Hb_005489_090 0.1087509428 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
15 Hb_001269_470 0.1095201939 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
16 Hb_001124_180 0.1098642587 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
17 Hb_001322_230 0.1110903819 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
18 Hb_004440_060 0.1132391153 - - aldose 1-epimerase, putative [Ricinus communis]
19 Hb_002290_030 0.1138898083 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
20 Hb_000086_080 0.1145945769 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001711_120 Hb_001711_120 Hb_000510_030 Hb_000510_030 Hb_001711_120--Hb_000510_030 Hb_002053_010 Hb_002053_010 Hb_001711_120--Hb_002053_010 Hb_001629_090 Hb_001629_090 Hb_001711_120--Hb_001629_090 Hb_000983_070 Hb_000983_070 Hb_001711_120--Hb_000983_070 Hb_000392_550 Hb_000392_550 Hb_001711_120--Hb_000392_550 Hb_001369_790 Hb_001369_790 Hb_001711_120--Hb_001369_790 Hb_004317_030 Hb_004317_030 Hb_000510_030--Hb_004317_030 Hb_000510_030--Hb_000392_550 Hb_000510_030--Hb_001369_790 Hb_000032_370 Hb_000032_370 Hb_000510_030--Hb_000032_370 Hb_004440_060 Hb_004440_060 Hb_000510_030--Hb_004440_060 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_002053_010--Hb_001369_790 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_002290_030 Hb_002290_030 Hb_001629_090--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_001629_090--Hb_004375_050 Hb_001629_090--Hb_000983_070 Hb_003462_180 Hb_003462_180 Hb_001629_090--Hb_003462_180 Hb_002762_110 Hb_002762_110 Hb_001629_090--Hb_002762_110 Hb_001898_180 Hb_001898_180 Hb_000983_070--Hb_001898_180 Hb_010128_020 Hb_010128_020 Hb_000983_070--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_000983_070--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000983_070--Hb_003124_120 Hb_000983_070--Hb_002053_010 Hb_000392_550--Hb_001369_790 Hb_000392_550--Hb_000032_370 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_007192_030 Hb_007192_030 Hb_001369_790--Hb_007192_030 Hb_001369_790--Hb_004440_060 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.85124 6.48771 22.4226 14.8937 2.20344 3.59388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.09588 19.8646 10.5741 9.9915 32.3034

CAGE analysis