Hb_027298_010

Information

Type -
Description -
Location Contig27298: 9265-14013
Sequence    

Annotation

kegg
ID rcu:RCOM_0484190
description hypothetical protein
nr
ID XP_002531270.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GYX9
description Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=1 SV=1
trembl
ID B9SZ51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0484190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28513: 9151-14002 , PASA_asmbl_28514: 11661-12125
cDNA
(Sanger)
(ID:Location)		 044_P22.ab1: 9151-12120

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027298_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_019762_050 0.0664319888 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
3 Hb_000392_550 0.0971054511 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000032_370 0.108963706 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
5 Hb_065525_120 0.1139545411 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
6 Hb_140627_010 0.1159347426 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009780_050 0.119042478 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
8 Hb_001711_120 0.1190451004 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
9 Hb_000457_290 0.1214259907 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
10 Hb_004317_030 0.1214897265 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
11 Hb_000510_030 0.1259231979 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
12 Hb_001269_470 0.1289567505 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
13 Hb_001369_790 0.1322305589 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
14 Hb_003181_060 0.1343303961 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
15 Hb_000403_070 0.1359443501 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000140_270 0.1361774642 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
17 Hb_007632_170 0.1378851332 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
18 Hb_007192_030 0.1394334697 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
19 Hb_005846_030 0.1401171542 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
20 Hb_000622_290 0.141901972 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]

Gene co-expression network

sample Hb_027298_010 Hb_027298_010 Hb_019762_050 Hb_019762_050 Hb_027298_010--Hb_019762_050 Hb_000392_550 Hb_000392_550 Hb_027298_010--Hb_000392_550 Hb_000032_370 Hb_000032_370 Hb_027298_010--Hb_000032_370 Hb_065525_120 Hb_065525_120 Hb_027298_010--Hb_065525_120 Hb_140627_010 Hb_140627_010 Hb_027298_010--Hb_140627_010 Hb_009780_050 Hb_009780_050 Hb_027298_010--Hb_009780_050 Hb_000457_290 Hb_000457_290 Hb_019762_050--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_019762_050--Hb_000403_070 Hb_019762_050--Hb_000032_370 Hb_019762_050--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_019762_050--Hb_001575_060 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_001369_790 Hb_001369_790 Hb_000392_550--Hb_001369_790 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_000032_370--Hb_004317_030 Hb_000032_370--Hb_065525_120 Hb_002045_060 Hb_002045_060 Hb_000032_370--Hb_002045_060 Hb_000032_370--Hb_000510_030 Hb_000428_060 Hb_000428_060 Hb_000032_370--Hb_000428_060 Hb_065525_120--Hb_009780_050 Hb_154038_020 Hb_154038_020 Hb_065525_120--Hb_154038_020 Hb_001671_030 Hb_001671_030 Hb_065525_120--Hb_001671_030 Hb_007441_080 Hb_007441_080 Hb_065525_120--Hb_007441_080 Hb_140627_010--Hb_000035_480 Hb_140627_010--Hb_000403_070 Hb_140627_010--Hb_000457_290 Hb_001240_010 Hb_001240_010 Hb_140627_010--Hb_001240_010 Hb_006846_150 Hb_006846_150 Hb_140627_010--Hb_006846_150 Hb_140627_010--Hb_000392_550 Hb_000176_010 Hb_000176_010 Hb_009780_050--Hb_000176_010 Hb_001711_120 Hb_001711_120 Hb_009780_050--Hb_001711_120 Hb_000167_050 Hb_000167_050 Hb_009780_050--Hb_000167_050 Hb_002053_010 Hb_002053_010 Hb_009780_050--Hb_002053_010 Hb_001124_180 Hb_001124_180 Hb_009780_050--Hb_001124_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.70379 6.72044 26.3099 27.1944 4.60993 3.68094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.322 49.4708 20.0794 11.581 44.7777

CAGE analysis