Hb_000176_010

Information

Type -
Description -
Location Contig176: 20459-23976
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11170g
description POPTRDRAFT_737939; ribosomal protein L35
nr
ID XP_012071572.1
description PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
swissprot
ID P23326
description 50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1
trembl
ID A0A067KRB9
description 50S ribosomal protein L35 OS=Jatropha curcas GN=JCGZ_04079 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16850: 20477-23949 , PASA_asmbl_16851: 20980-23429
cDNA
(Sanger)
(ID:Location)		 005_C03.ab1: 20586-23949 , 009_O17.ab1: 20500-23938 , 038_N06.ab1: 20586-23949 , 043_E13.ab1: 20505-23938 , 047_C03.ab1: 20477-23938 , 048_B06.ab1: 20496-23871 , 050_M09.ab1: 20596-23875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_010 0.0 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
2 Hb_009780_050 0.074371258 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
3 Hb_001124_180 0.0944618098 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
4 Hb_000627_300 0.1087219877 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
5 Hb_000042_290 0.1096475998 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
6 Hb_002150_130 0.1108814396 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
7 Hb_000167_050 0.1138845205 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
8 Hb_005914_050 0.1146087037 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
9 Hb_001124_190 0.1163794851 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002374_300 0.1167569404 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
11 Hb_000723_290 0.1172237377 - - calcium lipid binding protein, putative [Ricinus communis]
12 Hb_002053_010 0.1225193178 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
13 Hb_005489_090 0.1268528956 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
14 Hb_005846_030 0.1323590391 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
15 Hb_001789_200 0.1349738015 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
16 Hb_009178_070 0.1357536983 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
17 Hb_001790_030 0.1413977309 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
18 Hb_001711_120 0.1414713954 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
19 Hb_000032_140 0.1442768135 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001369_790 0.1458403408 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000176_010 Hb_000176_010 Hb_009780_050 Hb_009780_050 Hb_000176_010--Hb_009780_050 Hb_001124_180 Hb_001124_180 Hb_000176_010--Hb_001124_180 Hb_000627_300 Hb_000627_300 Hb_000176_010--Hb_000627_300 Hb_000042_290 Hb_000042_290 Hb_000176_010--Hb_000042_290 Hb_002150_130 Hb_002150_130 Hb_000176_010--Hb_002150_130 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050 Hb_001711_120 Hb_001711_120 Hb_009780_050--Hb_001711_120 Hb_009780_050--Hb_000167_050 Hb_065525_120 Hb_065525_120 Hb_009780_050--Hb_065525_120 Hb_002053_010 Hb_002053_010 Hb_009780_050--Hb_002053_010 Hb_009780_050--Hb_001124_180 Hb_005489_090 Hb_005489_090 Hb_001124_180--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_001124_180--Hb_000042_290 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_000627_300--Hb_001124_180 Hb_000627_300--Hb_005489_090 Hb_002374_300 Hb_002374_300 Hb_000627_300--Hb_002374_300 Hb_000627_300--Hb_002150_130 Hb_005846_030 Hb_005846_030 Hb_000627_300--Hb_005846_030 Hb_000042_290--Hb_002150_130 Hb_000042_290--Hb_005489_090 Hb_000152_480 Hb_000152_480 Hb_000042_290--Hb_000152_480 Hb_000042_290--Hb_003935_080 Hb_005914_050 Hb_005914_050 Hb_002150_130--Hb_005914_050 Hb_009178_070 Hb_009178_070 Hb_002150_130--Hb_009178_070 Hb_004117_040 Hb_004117_040 Hb_002150_130--Hb_004117_040 Hb_000638_160 Hb_000638_160 Hb_000167_050--Hb_000638_160 Hb_000394_180 Hb_000394_180 Hb_000167_050--Hb_000394_180 Hb_000723_290 Hb_000723_290 Hb_000167_050--Hb_000723_290 Hb_000167_050--Hb_005846_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.20891 6.65567 69.0096 55.0803 6.91311 10.2038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9028 57.8228 21.8222 9.17692 91.0052

CAGE analysis