Hb_002150_130

Information

Type -
Description -
Location Contig2150: 104091-107898
Sequence    

Annotation

kegg
ID rcu:RCOM_1690720
description 50S ribosomal protein L18, chloroplast precursor, putative
nr
ID XP_002509912.1
description 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SX68
description 50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1
trembl
ID B9RCM8
description 50S ribosomal protein L18, chloroplast, putative OS=Ricinus communis GN=RCOM_1690720 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22237: 104053-105935 , PASA_asmbl_22240: 107129-107487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_130 0.0 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
2 Hb_000042_290 0.0911524318 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
3 Hb_005914_050 0.0997677045 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
4 Hb_000176_010 0.1108814396 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
5 Hb_000627_300 0.1151772753 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
6 Hb_009178_070 0.1152560337 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
7 Hb_004117_040 0.1169367168 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
8 Hb_006620_070 0.1209431124 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
9 Hb_001124_190 0.1218646511 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001124_180 0.1255147828 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
11 Hb_003038_100 0.1268858447 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
12 Hb_003209_010 0.1311359315 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
13 Hb_012545_040 0.1359614074 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_088500_010 0.1362648855 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
15 Hb_000110_230 0.1397942025 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
16 Hb_007426_170 0.1405002506 transcription factor TF Family: TCP -
17 Hb_000922_340 0.1417135652 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
18 Hb_000473_050 0.143047696 - - chromatin regulatory protein sir2, putative [Ricinus communis]
19 Hb_002759_120 0.1430971321 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004459_060 0.1437027919 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002150_130 Hb_002150_130 Hb_000042_290 Hb_000042_290 Hb_002150_130--Hb_000042_290 Hb_005914_050 Hb_005914_050 Hb_002150_130--Hb_005914_050 Hb_000176_010 Hb_000176_010 Hb_002150_130--Hb_000176_010 Hb_000627_300 Hb_000627_300 Hb_002150_130--Hb_000627_300 Hb_009178_070 Hb_009178_070 Hb_002150_130--Hb_009178_070 Hb_004117_040 Hb_004117_040 Hb_002150_130--Hb_004117_040 Hb_001124_180 Hb_001124_180 Hb_000042_290--Hb_001124_180 Hb_005489_090 Hb_005489_090 Hb_000042_290--Hb_005489_090 Hb_000152_480 Hb_000152_480 Hb_000042_290--Hb_000152_480 Hb_003935_080 Hb_003935_080 Hb_000042_290--Hb_003935_080 Hb_000042_290--Hb_000176_010 Hb_003209_010 Hb_003209_010 Hb_005914_050--Hb_003209_010 Hb_012545_040 Hb_012545_040 Hb_005914_050--Hb_012545_040 Hb_001124_190 Hb_001124_190 Hb_005914_050--Hb_001124_190 Hb_005914_050--Hb_000176_010 Hb_000676_020 Hb_000676_020 Hb_005914_050--Hb_000676_020 Hb_009780_050 Hb_009780_050 Hb_000176_010--Hb_009780_050 Hb_000176_010--Hb_001124_180 Hb_000176_010--Hb_000627_300 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050 Hb_000627_300--Hb_001124_180 Hb_000627_300--Hb_005489_090 Hb_002374_300 Hb_002374_300 Hb_000627_300--Hb_002374_300 Hb_005846_030 Hb_005846_030 Hb_000627_300--Hb_005846_030 Hb_088500_010 Hb_088500_010 Hb_009178_070--Hb_088500_010 Hb_009178_070--Hb_001124_190 Hb_009178_070--Hb_003209_010 Hb_009178_070--Hb_005914_050 Hb_000922_340 Hb_000922_340 Hb_009178_070--Hb_000922_340 Hb_006829_080 Hb_006829_080 Hb_004117_040--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_004117_040--Hb_172632_060 Hb_001959_060 Hb_001959_060 Hb_004117_040--Hb_001959_060 Hb_005333_200 Hb_005333_200 Hb_004117_040--Hb_005333_200 Hb_002986_090 Hb_002986_090 Hb_004117_040--Hb_002986_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2445 7.99883 153.895 82.828 23.0598 22.7827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.3194 77.4267 18.2058 17.165 183.92

CAGE analysis