Hb_005333_200

Information

Type -
Description -
Location Contig5333: 191034-193582
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17860g
description POPTRDRAFT_209217; hypothetical protein
nr
ID XP_012067989.1
description PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
swissprot
ID Q94CE3
description Beta carbonic anhydrase 5, chloroplastic OS=Arabidopsis thaliana GN=BCA5 PE=2 SV=1
trembl
ID A0A067KZ65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15879 PE=4 SV=1
Gene Ontology
ID GO:0004089
description beta carbonic anhydrase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47486: 190893-192829 , PASA_asmbl_47487: 190878-193566 , PASA_asmbl_47488: 192969-193258
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_200 0.0 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
2 Hb_003752_090 0.112781434 - - chitinase, putative [Ricinus communis]
3 Hb_003209_010 0.112933459 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
4 Hb_000152_490 0.1144588107 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
5 Hb_004117_040 0.116322248 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
6 Hb_000465_440 0.1169584029 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
7 Hb_001793_020 0.1170954442 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
8 Hb_003664_030 0.1185237623 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
9 Hb_000922_340 0.1194535366 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
10 Hb_000402_020 0.1266678279 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001021_210 0.1275630382 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_001649_030 0.1278903296 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
13 Hb_005217_030 0.1281266996 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
14 Hb_003549_140 0.1291914694 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_003994_080 0.1295399756 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
16 Hb_006130_020 0.1302525689 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
17 Hb_001269_500 0.1326304405 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
18 Hb_009288_040 0.133062186 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
19 Hb_003948_020 0.1337046038 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
20 Hb_000336_200 0.1345332531 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_005333_200 Hb_005333_200 Hb_003752_090 Hb_003752_090 Hb_005333_200--Hb_003752_090 Hb_003209_010 Hb_003209_010 Hb_005333_200--Hb_003209_010 Hb_000152_490 Hb_000152_490 Hb_005333_200--Hb_000152_490 Hb_004117_040 Hb_004117_040 Hb_005333_200--Hb_004117_040 Hb_000465_440 Hb_000465_440 Hb_005333_200--Hb_000465_440 Hb_001793_020 Hb_001793_020 Hb_005333_200--Hb_001793_020 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030 Hb_000922_340 Hb_000922_340 Hb_003209_010--Hb_000922_340 Hb_005914_050 Hb_005914_050 Hb_003209_010--Hb_005914_050 Hb_009178_070 Hb_009178_070 Hb_003209_010--Hb_009178_070 Hb_003209_010--Hb_004117_040 Hb_002150_130 Hb_002150_130 Hb_003209_010--Hb_002150_130 Hb_000152_490--Hb_002759_120 Hb_000108_150 Hb_000108_150 Hb_000152_490--Hb_000108_150 Hb_001269_500 Hb_001269_500 Hb_000152_490--Hb_001269_500 Hb_000152_490--Hb_003752_090 Hb_000152_490--Hb_000465_440 Hb_006829_080 Hb_006829_080 Hb_004117_040--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_004117_040--Hb_172632_060 Hb_001959_060 Hb_001959_060 Hb_004117_040--Hb_001959_060 Hb_004117_040--Hb_002150_130 Hb_002986_090 Hb_002986_090 Hb_004117_040--Hb_002986_090 Hb_000665_270 Hb_000665_270 Hb_000465_440--Hb_000665_270 Hb_000465_440--Hb_009288_040 Hb_000465_440--Hb_003752_090 Hb_000336_200 Hb_000336_200 Hb_000465_440--Hb_000336_200 Hb_000465_440--Hb_001793_020 Hb_000465_440--Hb_001649_030 Hb_001793_020--Hb_000665_270 Hb_000749_200 Hb_000749_200 Hb_001793_020--Hb_000749_200 Hb_000402_020 Hb_000402_020 Hb_001793_020--Hb_000402_020 Hb_000146_030 Hb_000146_030 Hb_001793_020--Hb_000146_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24824 4.85042 23.4645 11.675 1.78024 4.62479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90855 4.20168 2.78765 1.00004 19.9413

CAGE analysis