Hb_000922_340

Information

Type -
Description -
Location Contig922: 282262-285072
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08920g
description POPTRDRAFT_575176; hypothetical protein
nr
ID XP_012080047.1
description PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
swissprot
ID Q2VZE7
description Protein ApaG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=apaG PE=3 SV=1
trembl
ID A0A067KFP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11461 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62507: 282379-285199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_340 0.0 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
2 Hb_003209_010 0.0900799651 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
3 Hb_000473_050 0.1095594919 - - chromatin regulatory protein sir2, putative [Ricinus communis]
4 Hb_000042_290 0.1176529336 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
5 Hb_042083_040 0.117938215 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005333_200 0.1194535366 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
7 Hb_000120_990 0.1208075407 - - PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]
8 Hb_001124_190 0.1248111407 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005914_050 0.125229523 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
10 Hb_169209_010 0.1259317346 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
11 Hb_006829_080 0.1294511097 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
12 Hb_000152_490 0.1324503222 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
13 Hb_005563_010 0.132932008 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
14 Hb_003948_020 0.1346838836 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
15 Hb_009178_070 0.1355663873 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
16 Hb_003549_140 0.1361067512 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_001269_500 0.1368678859 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
18 Hb_002759_120 0.1369486665 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004117_040 0.1370604793 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
20 Hb_189003_060 0.1371871344 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_340 Hb_000922_340 Hb_003209_010 Hb_003209_010 Hb_000922_340--Hb_003209_010 Hb_000473_050 Hb_000473_050 Hb_000922_340--Hb_000473_050 Hb_000042_290 Hb_000042_290 Hb_000922_340--Hb_000042_290 Hb_042083_040 Hb_042083_040 Hb_000922_340--Hb_042083_040 Hb_005333_200 Hb_005333_200 Hb_000922_340--Hb_005333_200 Hb_000120_990 Hb_000120_990 Hb_000922_340--Hb_000120_990 Hb_005914_050 Hb_005914_050 Hb_003209_010--Hb_005914_050 Hb_003209_010--Hb_005333_200 Hb_009178_070 Hb_009178_070 Hb_003209_010--Hb_009178_070 Hb_004117_040 Hb_004117_040 Hb_003209_010--Hb_004117_040 Hb_002150_130 Hb_002150_130 Hb_003209_010--Hb_002150_130 Hb_006829_080 Hb_006829_080 Hb_000473_050--Hb_006829_080 Hb_189003_060 Hb_189003_060 Hb_000473_050--Hb_189003_060 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_009687_020 Hb_009687_020 Hb_000473_050--Hb_009687_020 Hb_001959_060 Hb_001959_060 Hb_000473_050--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_000473_050--Hb_000684_430 Hb_001124_180 Hb_001124_180 Hb_000042_290--Hb_001124_180 Hb_000042_290--Hb_002150_130 Hb_005489_090 Hb_005489_090 Hb_000042_290--Hb_005489_090 Hb_000152_480 Hb_000152_480 Hb_000042_290--Hb_000152_480 Hb_003935_080 Hb_003935_080 Hb_000042_290--Hb_003935_080 Hb_000176_010 Hb_000176_010 Hb_000042_290--Hb_000176_010 Hb_174865_040 Hb_174865_040 Hb_042083_040--Hb_174865_040 Hb_001976_030 Hb_001976_030 Hb_042083_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_042083_040--Hb_001628_120 Hb_156850_100 Hb_156850_100 Hb_042083_040--Hb_156850_100 Hb_000049_180 Hb_000049_180 Hb_042083_040--Hb_000049_180 Hb_000096_190 Hb_000096_190 Hb_042083_040--Hb_000096_190 Hb_003752_090 Hb_003752_090 Hb_005333_200--Hb_003752_090 Hb_000152_490 Hb_000152_490 Hb_005333_200--Hb_000152_490 Hb_005333_200--Hb_004117_040 Hb_000465_440 Hb_000465_440 Hb_005333_200--Hb_000465_440 Hb_001793_020 Hb_001793_020 Hb_005333_200--Hb_001793_020 Hb_000397_150 Hb_000397_150 Hb_000120_990--Hb_000397_150 Hb_009288_040 Hb_009288_040 Hb_000120_990--Hb_009288_040 Hb_000680_010 Hb_000680_010 Hb_000120_990--Hb_000680_010 Hb_001269_500 Hb_001269_500 Hb_000120_990--Hb_001269_500 Hb_003994_080 Hb_003994_080 Hb_000120_990--Hb_003994_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.74291 5.3154 42.3334 25.7293 3.52802 7.89647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6698 11.875 12.5317 3.17475 51.7386

CAGE analysis