Hb_000120_990

Information

Type -
Description -
Location Contig120: 751709-757949
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10580g
description POPTRDRAFT_1077830; hypothetical protein
nr
ID XP_012065355.1
description PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SVE7
description MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2
trembl
ID A0A067LHS9
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_22366 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06242: 751872-754123 , PASA_asmbl_06243: 754178-757030 , PASA_asmbl_06244: 755148-757030 , PASA_asmbl_06245: 755970-756584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_990 0.0 - - PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]
2 Hb_000397_150 0.1039278434 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
3 Hb_009288_040 0.1178718874 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
4 Hb_000922_340 0.1208075407 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
5 Hb_000680_010 0.1220430082 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
6 Hb_001269_500 0.1263784829 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
7 Hb_003994_080 0.1267733814 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
8 Hb_005665_090 0.1269646797 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
9 Hb_042083_040 0.128313331 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007441_310 0.1306550481 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
11 Hb_001976_030 0.1314408249 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
12 Hb_000537_070 0.1325476433 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
13 Hb_156850_100 0.1326966667 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
14 Hb_002915_010 0.1330140369 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
15 Hb_000390_190 0.1331740476 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000320_190 0.1333967995 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
17 Hb_000473_050 0.1342335617 - - chromatin regulatory protein sir2, putative [Ricinus communis]
18 Hb_012779_080 0.1350133061 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
19 Hb_003752_090 0.1354780429 - - chitinase, putative [Ricinus communis]
20 Hb_003209_010 0.1355163173 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]

Gene co-expression network

sample Hb_000120_990 Hb_000120_990 Hb_000397_150 Hb_000397_150 Hb_000120_990--Hb_000397_150 Hb_009288_040 Hb_009288_040 Hb_000120_990--Hb_009288_040 Hb_000922_340 Hb_000922_340 Hb_000120_990--Hb_000922_340 Hb_000680_010 Hb_000680_010 Hb_000120_990--Hb_000680_010 Hb_001269_500 Hb_001269_500 Hb_000120_990--Hb_001269_500 Hb_003994_080 Hb_003994_080 Hb_000120_990--Hb_003994_080 Hb_007441_310 Hb_007441_310 Hb_000397_150--Hb_007441_310 Hb_000114_150 Hb_000114_150 Hb_000397_150--Hb_000114_150 Hb_001628_120 Hb_001628_120 Hb_000397_150--Hb_001628_120 Hb_048093_010 Hb_048093_010 Hb_000397_150--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000397_150--Hb_001195_770 Hb_032631_070 Hb_032631_070 Hb_000397_150--Hb_032631_070 Hb_003752_090 Hb_003752_090 Hb_009288_040--Hb_003752_090 Hb_005665_090 Hb_005665_090 Hb_009288_040--Hb_005665_090 Hb_012779_080 Hb_012779_080 Hb_009288_040--Hb_012779_080 Hb_010620_050 Hb_010620_050 Hb_009288_040--Hb_010620_050 Hb_000094_100 Hb_000094_100 Hb_009288_040--Hb_000094_100 Hb_000465_440 Hb_000465_440 Hb_009288_040--Hb_000465_440 Hb_003209_010 Hb_003209_010 Hb_000922_340--Hb_003209_010 Hb_000473_050 Hb_000473_050 Hb_000922_340--Hb_000473_050 Hb_000042_290 Hb_000042_290 Hb_000922_340--Hb_000042_290 Hb_042083_040 Hb_042083_040 Hb_000922_340--Hb_042083_040 Hb_005333_200 Hb_005333_200 Hb_000922_340--Hb_005333_200 Hb_003883_010 Hb_003883_010 Hb_000680_010--Hb_003883_010 Hb_160271_010 Hb_160271_010 Hb_000680_010--Hb_160271_010 Hb_000291_180 Hb_000291_180 Hb_000680_010--Hb_000291_180 Hb_002915_010 Hb_002915_010 Hb_000680_010--Hb_002915_010 Hb_002107_050 Hb_002107_050 Hb_000680_010--Hb_002107_050 Hb_000320_190 Hb_000320_190 Hb_000680_010--Hb_000320_190 Hb_001649_030 Hb_001649_030 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_009687_020 Hb_009687_020 Hb_001269_500--Hb_009687_020 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_006198_130 Hb_006198_130 Hb_001269_500--Hb_006198_130 Hb_003994_080--Hb_003752_090 Hb_005000_080 Hb_005000_080 Hb_003994_080--Hb_005000_080 Hb_001021_210 Hb_001021_210 Hb_003994_080--Hb_001021_210 Hb_138585_030 Hb_138585_030 Hb_003994_080--Hb_138585_030 Hb_000025_540 Hb_000025_540 Hb_003994_080--Hb_000025_540 Hb_003994_080--Hb_010620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.94508 4.62955 21.3285 14.4395 1.81734 3.5249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.82512 4.08227 4.38779 4.15244 25.2024

CAGE analysis