Hb_000465_440

Information

Type -
Description -
Location Contig465: 398863-405092
Sequence    

Annotation

kegg
ID rcu:RCOM_0191350
description polycomb protein embryonic flower, putative
nr
ID XP_012070068.1
description PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
swissprot
ID Q8W5B1
description Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana GN=VRN2 PE=1 SV=2
trembl
ID B9T283
description Polycomb protein embryonic flower, putative OS=Ricinus communis GN=RCOM_0191350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44009: 400110-400390 , PASA_asmbl_44010: 400658-402361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_440 0.0 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
2 Hb_000665_270 0.0755505104 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
3 Hb_009288_040 0.0908014598 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
4 Hb_003752_090 0.0925118499 - - chitinase, putative [Ricinus communis]
5 Hb_000336_200 0.0967971071 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_001793_020 0.1116865958 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
7 Hb_001649_030 0.1136707676 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
8 Hb_000749_200 0.1149213299 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
9 Hb_010620_050 0.1161985683 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
10 Hb_005333_200 0.1169584029 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
11 Hb_073973_120 0.1174665929 - - zinc finger protein, putative [Ricinus communis]
12 Hb_001269_500 0.1179281451 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
13 Hb_004158_050 0.1193042278 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
14 Hb_000152_490 0.1214766045 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
15 Hb_002107_050 0.1230935132 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
16 Hb_002759_120 0.1238733772 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012779_080 0.1259374409 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
18 Hb_000402_020 0.1282109481 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_005665_090 0.1284958432 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
20 Hb_004117_040 0.1309819782 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_440 Hb_000465_440 Hb_000665_270 Hb_000665_270 Hb_000465_440--Hb_000665_270 Hb_009288_040 Hb_009288_040 Hb_000465_440--Hb_009288_040 Hb_003752_090 Hb_003752_090 Hb_000465_440--Hb_003752_090 Hb_000336_200 Hb_000336_200 Hb_000465_440--Hb_000336_200 Hb_001793_020 Hb_001793_020 Hb_000465_440--Hb_001793_020 Hb_001649_030 Hb_001649_030 Hb_000465_440--Hb_001649_030 Hb_000665_270--Hb_001649_030 Hb_000665_270--Hb_000336_200 Hb_001269_500 Hb_001269_500 Hb_000665_270--Hb_001269_500 Hb_000358_040 Hb_000358_040 Hb_000665_270--Hb_000358_040 Hb_000665_270--Hb_009288_040 Hb_009288_040--Hb_003752_090 Hb_005665_090 Hb_005665_090 Hb_009288_040--Hb_005665_090 Hb_012779_080 Hb_012779_080 Hb_009288_040--Hb_012779_080 Hb_010620_050 Hb_010620_050 Hb_009288_040--Hb_010620_050 Hb_000094_100 Hb_000094_100 Hb_009288_040--Hb_000094_100 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_003752_090--Hb_001649_030 Hb_000336_200--Hb_001269_500 Hb_000336_200--Hb_001649_030 Hb_000336_200--Hb_000358_040 Hb_000336_200--Hb_009288_040 Hb_005333_200 Hb_005333_200 Hb_001793_020--Hb_005333_200 Hb_001793_020--Hb_000665_270 Hb_000749_200 Hb_000749_200 Hb_001793_020--Hb_000749_200 Hb_000402_020 Hb_000402_020 Hb_001793_020--Hb_000402_020 Hb_000146_030 Hb_000146_030 Hb_001793_020--Hb_000146_030 Hb_001649_030--Hb_001269_500 Hb_002928_030 Hb_002928_030 Hb_001649_030--Hb_002928_030 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.536378 1.06461 4.15348 2.67841 0.803805 1.21173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.78045 0.931649 0.199827 0.565335 4.00685

CAGE analysis