Hb_002928_030

Information

Type -
Description -
Location Contig2928: 18482-22945
Sequence    

Annotation

kegg
ID cic:CICLE_v10001788mg
description hypothetical protein
nr
ID XP_006435338.1
description hypothetical protein CICLE_v10001788mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067GZB7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019961mg PE=4 SV=1
Gene Ontology
ID GO:0009570
description hypothetical protein CICLE_v10001788mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30681: 19771-20061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_030 0.0 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
2 Hb_001649_030 0.0683439991 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
3 Hb_000358_040 0.0825474592 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
4 Hb_004629_030 0.0860945634 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_003376_390 0.0895161942 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
6 Hb_025194_090 0.0896783896 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
7 Hb_004871_010 0.0912200013 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
8 Hb_000260_710 0.0919883127 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
9 Hb_000537_070 0.0927651412 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
10 Hb_148146_010 0.093913471 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
11 Hb_005116_100 0.0946755859 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
12 Hb_000579_040 0.0963389918 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
13 Hb_004223_270 0.0964431764 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
14 Hb_002005_040 0.097104796 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_004837_210 0.0972413275 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
16 Hb_009288_040 0.0974068579 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
17 Hb_000684_430 0.097660912 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
18 Hb_027445_100 0.0989578329 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
19 Hb_000762_110 0.1003346227 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
20 Hb_001269_500 0.1010957148 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002928_030 Hb_002928_030 Hb_001649_030 Hb_001649_030 Hb_002928_030--Hb_001649_030 Hb_000358_040 Hb_000358_040 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_003376_390 Hb_003376_390 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010 Hb_001269_500 Hb_001269_500 Hb_001649_030--Hb_001269_500 Hb_000665_270 Hb_000665_270 Hb_001649_030--Hb_000665_270 Hb_003752_090 Hb_003752_090 Hb_001649_030--Hb_003752_090 Hb_001649_030--Hb_000358_040 Hb_001649_030--Hb_003376_390 Hb_000358_040--Hb_004629_030 Hb_000260_710 Hb_000260_710 Hb_000358_040--Hb_000260_710 Hb_000482_050 Hb_000482_050 Hb_000358_040--Hb_000482_050 Hb_000358_040--Hb_003376_390 Hb_004629_030--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_004629_030--Hb_068804_090 Hb_000748_090 Hb_000748_090 Hb_004629_030--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_004629_030--Hb_007012_030 Hb_000617_250 Hb_000617_250 Hb_004629_030--Hb_000617_250 Hb_003376_390--Hb_004871_010 Hb_172632_060 Hb_172632_060 Hb_003376_390--Hb_172632_060 Hb_000574_470 Hb_000574_470 Hb_003376_390--Hb_000574_470 Hb_000579_040 Hb_000579_040 Hb_025194_090--Hb_000579_040 Hb_003029_020 Hb_003029_020 Hb_025194_090--Hb_003029_020 Hb_004502_010 Hb_004502_010 Hb_025194_090--Hb_004502_010 Hb_025194_090--Hb_004629_030 Hb_000496_130 Hb_000496_130 Hb_025194_090--Hb_000496_130 Hb_004871_010--Hb_000260_710 Hb_000976_190 Hb_000976_190 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76021 6.57342 15.6246 7.01676 3.43352 2.89443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40568 2.93133 2.25955 3.45244 21.9709

CAGE analysis