Hb_004502_010

Information

Type -
Description -
Location Contig4502: 2587-5844
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04040g
description POPTRDRAFT_809484; hypothetical protein
nr
ID KDP23743.1
description hypothetical protein JCGZ_23576 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23576 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43168: 2901-5549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004502_010 0.0 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
2 Hb_025194_090 0.0818405285 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
3 Hb_005917_020 0.1036431906 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
4 Hb_003029_020 0.1120307337 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
5 Hb_005116_100 0.1120891366 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
6 Hb_005618_080 0.1193102104 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
7 Hb_000402_020 0.1208782439 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001959_060 0.1249714235 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
9 Hb_004223_270 0.1257665857 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
10 Hb_003680_090 0.1274242364 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
11 Hb_010128_020 0.130503634 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
12 Hb_001390_100 0.1355557999 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
13 Hb_000548_060 0.1360145813 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
14 Hb_004648_030 0.1362945667 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
15 Hb_002075_030 0.1371586615 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
16 Hb_172632_060 0.1399605729 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
17 Hb_006829_080 0.1406560178 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
18 Hb_000951_120 0.1406723334 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
19 Hb_001649_030 0.141530524 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
20 Hb_014361_110 0.1416408425 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004502_010 Hb_004502_010 Hb_025194_090 Hb_025194_090 Hb_004502_010--Hb_025194_090 Hb_005917_020 Hb_005917_020 Hb_004502_010--Hb_005917_020 Hb_003029_020 Hb_003029_020 Hb_004502_010--Hb_003029_020 Hb_005116_100 Hb_005116_100 Hb_004502_010--Hb_005116_100 Hb_005618_080 Hb_005618_080 Hb_004502_010--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_004502_010--Hb_000402_020 Hb_000579_040 Hb_000579_040 Hb_025194_090--Hb_000579_040 Hb_025194_090--Hb_003029_020 Hb_004629_030 Hb_004629_030 Hb_025194_090--Hb_004629_030 Hb_002928_030 Hb_002928_030 Hb_025194_090--Hb_002928_030 Hb_000496_130 Hb_000496_130 Hb_025194_090--Hb_000496_130 Hb_003680_090 Hb_003680_090 Hb_005917_020--Hb_003680_090 Hb_011114_020 Hb_011114_020 Hb_005917_020--Hb_011114_020 Hb_000307_070 Hb_000307_070 Hb_005917_020--Hb_000307_070 Hb_001959_060 Hb_001959_060 Hb_005917_020--Hb_001959_060 Hb_002811_310 Hb_002811_310 Hb_005917_020--Hb_002811_310 Hb_010128_020 Hb_010128_020 Hb_003029_020--Hb_010128_020 Hb_002075_030 Hb_002075_030 Hb_003029_020--Hb_002075_030 Hb_002542_160 Hb_002542_160 Hb_003029_020--Hb_002542_160 Hb_003171_030 Hb_003171_030 Hb_003029_020--Hb_003171_030 Hb_001438_010 Hb_001438_010 Hb_003029_020--Hb_001438_010 Hb_002005_040 Hb_002005_040 Hb_005116_100--Hb_002005_040 Hb_148146_010 Hb_148146_010 Hb_005116_100--Hb_148146_010 Hb_005116_100--Hb_005618_080 Hb_005116_100--Hb_000402_020 Hb_004055_160 Hb_004055_160 Hb_005116_100--Hb_004055_160 Hb_001649_030 Hb_001649_030 Hb_005116_100--Hb_001649_030 Hb_005618_080--Hb_001959_060 Hb_005618_080--Hb_000402_020 Hb_000056_310 Hb_000056_310 Hb_005618_080--Hb_000056_310 Hb_006829_080 Hb_006829_080 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_000402_020--Hb_001959_060 Hb_003752_090 Hb_003752_090 Hb_000402_020--Hb_003752_090 Hb_000402_020--Hb_006829_080 Hb_000402_020--Hb_000056_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.297338 1.14101 4.56759 1.30191 0.541057 0.646758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.869519 1.32201 0.249823 1.7281 5.54951

CAGE analysis