Hb_148146_010

Information

Type -
Description -
Location Contig148146: 4541-7567
Sequence    

Annotation

kegg
ID pop:POPTR_0011s00650g
description POPTRDRAFT_771064; hypothetical protein
nr
ID ACH73029.1
description coproporphyrinogen III oxidase [Ziziphus jujuba]
swissprot
ID P35055
description Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic OS=Glycine max GN=CPX PE=2 SV=1
trembl
ID B5TJK9
description Coproporphyrinogen III oxidase (Fragment) OS=Ziziphus jujuba PE=2 SV=1
Gene Ontology
ID GO:0004109
description oxygen-dependent coproporphyrinogen-iii chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12137: 4742-7510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148146_010 0.0 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
2 Hb_000056_310 0.0817412405 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
3 Hb_000684_430 0.0857986311 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
4 Hb_005116_100 0.0858431509 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
5 Hb_001959_060 0.0881846207 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
6 Hb_004837_210 0.0903817201 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
7 Hb_002928_030 0.093913471 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
8 Hb_005074_050 0.0958415045 - - PREDICTED: myosin-6-like [Jatropha curcas]
9 Hb_003664_030 0.0958836062 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
10 Hb_001953_100 0.09987445 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
11 Hb_005618_080 0.1017742231 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
12 Hb_000094_100 0.1036299189 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
13 Hb_000402_020 0.1039004041 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_002044_160 0.1079261078 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
15 Hb_002005_040 0.1092081171 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_004223_270 0.1095443336 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
17 Hb_003752_090 0.112243721 - - chitinase, putative [Ricinus communis]
18 Hb_001649_030 0.112700506 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
19 Hb_006829_080 0.1170824478 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
20 Hb_005000_060 0.1178614841 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]

Gene co-expression network

sample Hb_148146_010 Hb_148146_010 Hb_000056_310 Hb_000056_310 Hb_148146_010--Hb_000056_310 Hb_000684_430 Hb_000684_430 Hb_148146_010--Hb_000684_430 Hb_005116_100 Hb_005116_100 Hb_148146_010--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_148146_010--Hb_001959_060 Hb_004837_210 Hb_004837_210 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_005618_080 Hb_005618_080 Hb_000056_310--Hb_005618_080 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000056_310--Hb_001953_100 Hb_000749_200 Hb_000749_200 Hb_000056_310--Hb_000749_200 Hb_000684_430--Hb_001959_060 Hb_004055_160 Hb_004055_160 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_006829_080 Hb_006829_080 Hb_000684_430--Hb_006829_080 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_005116_100--Hb_002005_040 Hb_005116_100--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_005116_100--Hb_000402_020 Hb_005116_100--Hb_004055_160 Hb_001649_030 Hb_001649_030 Hb_005116_100--Hb_001649_030 Hb_001959_060--Hb_006829_080 Hb_001959_060--Hb_005618_080 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_001959_060--Hb_000402_020 Hb_003683_030 Hb_003683_030 Hb_004837_210--Hb_003683_030 Hb_000094_100 Hb_000094_100 Hb_004837_210--Hb_000094_100 Hb_012779_080 Hb_012779_080 Hb_004837_210--Hb_012779_080 Hb_004837_210--Hb_002928_030 Hb_005074_050 Hb_005074_050 Hb_004837_210--Hb_005074_050 Hb_002928_030--Hb_001649_030 Hb_000358_040 Hb_000358_040 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_003376_390 Hb_003376_390 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6818 29.0678 130.383 41.1072 15.4998 10.9987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6095 13.5991 13.8617 20.8639 132.664

CAGE analysis