Hb_189003_060

Information

Type -
Description -
Location Contig189003: 19218-28903
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40130g
description hypothetical protein
nr
ID XP_012075801.1
description PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q93ZB6
description Uroporphyrinogen decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=HEME1 PE=2 SV=2
trembl
ID A0A067KIG0
description Uroporphyrinogen decarboxylase OS=Jatropha curcas GN=JCGZ_10543 PE=3 SV=1
Gene Ontology
ID GO:0004853
description uroporphyrinogen decarboxylase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18742: 19133-28911
cDNA
(Sanger)
(ID:Location)		 029_E12.ab1: 21661-28904

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189003_060 0.0 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000473_050 0.0851732977 - - chromatin regulatory protein sir2, putative [Ricinus communis]
3 Hb_005147_080 0.0881547474 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002075_030 0.0883170354 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
5 Hb_001959_060 0.0895357521 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
6 Hb_000684_430 0.0997266601 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
7 Hb_000480_040 0.0999248511 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
8 Hb_001723_030 0.1005542132 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
9 Hb_010128_020 0.102104646 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
10 Hb_006829_080 0.1026656571 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
11 Hb_010344_020 0.1032501509 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
12 Hb_003029_020 0.1062598992 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
13 Hb_002217_140 0.1075038783 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
14 Hb_000579_040 0.1087054187 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
15 Hb_007426_170 0.1090680564 transcription factor TF Family: TCP -
16 Hb_000816_200 0.1096023313 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
17 Hb_000085_070 0.1113464979 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
18 Hb_003171_030 0.1128872313 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
19 Hb_000976_190 0.113253218 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
20 Hb_002986_090 0.1137646598 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_189003_060 Hb_189003_060 Hb_000473_050 Hb_000473_050 Hb_189003_060--Hb_000473_050 Hb_005147_080 Hb_005147_080 Hb_189003_060--Hb_005147_080 Hb_002075_030 Hb_002075_030 Hb_189003_060--Hb_002075_030 Hb_001959_060 Hb_001959_060 Hb_189003_060--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_189003_060--Hb_000684_430 Hb_000480_040 Hb_000480_040 Hb_189003_060--Hb_000480_040 Hb_006829_080 Hb_006829_080 Hb_000473_050--Hb_006829_080 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_009687_020 Hb_009687_020 Hb_000473_050--Hb_009687_020 Hb_000473_050--Hb_001959_060 Hb_000473_050--Hb_000684_430 Hb_002290_030 Hb_002290_030 Hb_005147_080--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_005147_080--Hb_004375_050 Hb_010344_020 Hb_010344_020 Hb_005147_080--Hb_010344_020 Hb_011861_050 Hb_011861_050 Hb_005147_080--Hb_011861_050 Hb_000318_130 Hb_000318_130 Hb_005147_080--Hb_000318_130 Hb_032631_070 Hb_032631_070 Hb_002075_030--Hb_032631_070 Hb_001307_100 Hb_001307_100 Hb_002075_030--Hb_001307_100 Hb_000579_040 Hb_000579_040 Hb_002075_030--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_002075_030--Hb_007441_310 Hb_003029_020 Hb_003029_020 Hb_002075_030--Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_002075_030--Hb_010128_020 Hb_001959_060--Hb_006829_080 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020 Hb_004055_160 Hb_004055_160 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_000684_430--Hb_006829_080 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_000309_020 Hb_000309_020 Hb_000480_040--Hb_000309_020 Hb_000480_040--Hb_011861_050 Hb_000085_070 Hb_000085_070 Hb_000480_040--Hb_000085_070 Hb_000941_100 Hb_000941_100 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_000108_020 Hb_000108_020 Hb_000480_040--Hb_000108_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.96589 3.69313 25.6034 10.6349 4.04666 5.54917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.47869 6.93129 7.33078 7.46228 34.9898

CAGE analysis