Hb_000318_130

Information

Type -
Description -
Location Contig318: 118683-121859
Sequence    

Annotation

kegg
ID rcu:RCOM_0774040
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002521838.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9XIL5
description Pentatricopeptide repeat-containing protein At2g15820 OS=Arabidopsis thaliana GN=At2g15820 PE=2 SV=3
trembl
ID B9S769
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0774040 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at2g15820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33500: 121479-121844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_130 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_004375_050 0.0891305603 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_003941_030 0.0998487919 - - Protease ecfE, putative [Ricinus communis]
4 Hb_001138_060 0.1002615305 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
5 Hb_005147_080 0.1023308518 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_002290_030 0.1033146756 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
7 Hb_002660_190 0.1099187956 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
8 Hb_003124_120 0.1113039733 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
9 Hb_000340_150 0.1114047957 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
10 Hb_000983_070 0.1128762348 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005282_020 0.1141300669 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
12 Hb_000676_200 0.1147258586 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
13 Hb_009778_060 0.1148596532 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
14 Hb_001195_770 0.1201112186 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
15 Hb_002374_250 0.1201178368 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001214_050 0.1208578736 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
17 Hb_001946_380 0.1212296096 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
18 Hb_001449_070 0.1218060718 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000684_280 0.1218568984 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
20 Hb_001629_090 0.1250127213 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000318_130 Hb_000318_130 Hb_004375_050 Hb_004375_050 Hb_000318_130--Hb_004375_050 Hb_003941_030 Hb_003941_030 Hb_000318_130--Hb_003941_030 Hb_001138_060 Hb_001138_060 Hb_000318_130--Hb_001138_060 Hb_005147_080 Hb_005147_080 Hb_000318_130--Hb_005147_080 Hb_002290_030 Hb_002290_030 Hb_000318_130--Hb_002290_030 Hb_002660_190 Hb_002660_190 Hb_000318_130--Hb_002660_190 Hb_004375_050--Hb_002290_030 Hb_001629_090 Hb_001629_090 Hb_004375_050--Hb_001629_090 Hb_004375_050--Hb_005147_080 Hb_000340_150 Hb_000340_150 Hb_004375_050--Hb_000340_150 Hb_001195_770 Hb_001195_770 Hb_004375_050--Hb_001195_770 Hb_000684_280 Hb_000684_280 Hb_003941_030--Hb_000684_280 Hb_000032_400 Hb_000032_400 Hb_003941_030--Hb_000032_400 Hb_000661_090 Hb_000661_090 Hb_003941_030--Hb_000661_090 Hb_002078_300 Hb_002078_300 Hb_003941_030--Hb_002078_300 Hb_003941_030--Hb_004375_050 Hb_001723_060 Hb_001723_060 Hb_001138_060--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001138_060--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001138_060--Hb_009778_060 Hb_001195_450 Hb_001195_450 Hb_001138_060--Hb_001195_450 Hb_000077_150 Hb_000077_150 Hb_001138_060--Hb_000077_150 Hb_005147_080--Hb_002290_030 Hb_010344_020 Hb_010344_020 Hb_005147_080--Hb_010344_020 Hb_011861_050 Hb_011861_050 Hb_005147_080--Hb_011861_050 Hb_189003_060 Hb_189003_060 Hb_005147_080--Hb_189003_060 Hb_002290_030--Hb_001629_090 Hb_000983_070 Hb_000983_070 Hb_002290_030--Hb_000983_070 Hb_003029_020 Hb_003029_020 Hb_002290_030--Hb_003029_020 Hb_001427_040 Hb_001427_040 Hb_002660_190--Hb_001427_040 Hb_004108_060 Hb_004108_060 Hb_002660_190--Hb_004108_060 Hb_002282_070 Hb_002282_070 Hb_002660_190--Hb_002282_070 Hb_002660_190--Hb_011861_050 Hb_000345_370 Hb_000345_370 Hb_002660_190--Hb_000345_370 Hb_003475_020 Hb_003475_020 Hb_002660_190--Hb_003475_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.97523 6.01278 12.1115 8.37822 3.99636 5.06902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88282 8.86598 12.7318 6.24199 34.384

CAGE analysis