Hb_002290_030

Information

Type -
Description -
Location Contig2290: 9025-27797
Sequence    

Annotation

kegg
ID rcu:RCOM_1258790
description hypothetical protein
nr
ID XP_012074391.1
description PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
swissprot
ID P91927
description LETM1 and EF-hand domain-containing protein anon-60Da, mitochondrial OS=Drosophila melanogaster GN=Letm1 PE=2 SV=2
trembl
ID A0A067KWH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08828 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23882: 9214-24269
cDNA
(Sanger)
(ID:Location)		 017_O20.ab1: 23047-24248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002290_030 0.0 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
2 Hb_004375_050 0.0562293707 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_001629_090 0.0606402279 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005147_080 0.0786559305 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000983_070 0.0990456511 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000318_130 0.1033146756 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_003029_020 0.1072981011 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_010128_020 0.1100119025 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
9 Hb_001711_120 0.1138898083 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
10 Hb_002075_030 0.1149168782 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
11 Hb_005276_010 0.1152034041 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
12 Hb_001195_770 0.1159416276 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
13 Hb_000340_150 0.1186876389 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
14 Hb_001946_160 0.119878891 - - putative chaperon P13.9 [Castanea sativa]
15 Hb_005489_090 0.1227790344 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
16 Hb_001277_100 0.1231880943 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
17 Hb_003462_180 0.1233982831 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
18 Hb_001438_010 0.1246130532 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
19 Hb_003941_030 0.1247712771 - - Protease ecfE, putative [Ricinus communis]
20 Hb_000941_100 0.1263915664 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002290_030 Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_002290_030--Hb_004375_050 Hb_001629_090 Hb_001629_090 Hb_002290_030--Hb_001629_090 Hb_005147_080 Hb_005147_080 Hb_002290_030--Hb_005147_080 Hb_000983_070 Hb_000983_070 Hb_002290_030--Hb_000983_070 Hb_000318_130 Hb_000318_130 Hb_002290_030--Hb_000318_130 Hb_003029_020 Hb_003029_020 Hb_002290_030--Hb_003029_020 Hb_004375_050--Hb_001629_090 Hb_004375_050--Hb_005147_080 Hb_000340_150 Hb_000340_150 Hb_004375_050--Hb_000340_150 Hb_004375_050--Hb_000318_130 Hb_001195_770 Hb_001195_770 Hb_004375_050--Hb_001195_770 Hb_001629_090--Hb_000983_070 Hb_001711_120 Hb_001711_120 Hb_001629_090--Hb_001711_120 Hb_003462_180 Hb_003462_180 Hb_001629_090--Hb_003462_180 Hb_002762_110 Hb_002762_110 Hb_001629_090--Hb_002762_110 Hb_010344_020 Hb_010344_020 Hb_005147_080--Hb_010344_020 Hb_011861_050 Hb_011861_050 Hb_005147_080--Hb_011861_050 Hb_189003_060 Hb_189003_060 Hb_005147_080--Hb_189003_060 Hb_005147_080--Hb_000318_130 Hb_001898_180 Hb_001898_180 Hb_000983_070--Hb_001898_180 Hb_010128_020 Hb_010128_020 Hb_000983_070--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_000983_070--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000983_070--Hb_003124_120 Hb_002053_010 Hb_002053_010 Hb_000983_070--Hb_002053_010 Hb_003941_030 Hb_003941_030 Hb_000318_130--Hb_003941_030 Hb_001138_060 Hb_001138_060 Hb_000318_130--Hb_001138_060 Hb_002660_190 Hb_002660_190 Hb_000318_130--Hb_002660_190 Hb_003029_020--Hb_010128_020 Hb_025194_090 Hb_025194_090 Hb_003029_020--Hb_025194_090 Hb_002075_030 Hb_002075_030 Hb_003029_020--Hb_002075_030 Hb_002542_160 Hb_002542_160 Hb_003029_020--Hb_002542_160 Hb_003171_030 Hb_003171_030 Hb_003029_020--Hb_003171_030 Hb_001438_010 Hb_001438_010 Hb_003029_020--Hb_001438_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.21282 16.4582 40.6949 17.3083 6.86357 9.79575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5241 26.7353 19.9177 10.8101 69.5131

CAGE analysis