Hb_001629_090

Information

Type -
Description -
Location Contig1629: 62491-65783
Sequence    

Annotation

kegg
ID rcu:RCOM_0380540
description hypothetical protein
nr
ID XP_002533708.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T639
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0380540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14786: 62515-65250 , PASA_asmbl_14787: 62515-65754 , PASA_asmbl_14788: 63765-64072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002290_030 0.0606402279 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
3 Hb_004375_050 0.0642071308 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000983_070 0.0856391279 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001711_120 0.0927980046 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
6 Hb_003462_180 0.0972680092 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
7 Hb_002762_110 0.1028654245 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001898_180 0.1030220576 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
9 Hb_005511_140 0.1059921372 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
10 Hb_000023_360 0.1077643478 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
11 Hb_002053_010 0.1080233145 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
12 Hb_001214_050 0.1089157916 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
13 Hb_001195_450 0.1089975215 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
14 Hb_001227_090 0.1090072062 - - peroxiredoxin, putative [Ricinus communis]
15 Hb_001195_770 0.1095870959 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
16 Hb_000340_150 0.1115306017 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
17 Hb_001675_140 0.1137725058 - - hypothetical protein L484_026216 [Morus notabilis]
18 Hb_001277_100 0.1142951126 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
19 Hb_004242_110 0.1166288646 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
20 Hb_000941_100 0.1190488646 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001629_090 Hb_001629_090 Hb_002290_030 Hb_002290_030 Hb_001629_090--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_001629_090--Hb_004375_050 Hb_000983_070 Hb_000983_070 Hb_001629_090--Hb_000983_070 Hb_001711_120 Hb_001711_120 Hb_001629_090--Hb_001711_120 Hb_003462_180 Hb_003462_180 Hb_001629_090--Hb_003462_180 Hb_002762_110 Hb_002762_110 Hb_001629_090--Hb_002762_110 Hb_002290_030--Hb_004375_050 Hb_005147_080 Hb_005147_080 Hb_002290_030--Hb_005147_080 Hb_002290_030--Hb_000983_070 Hb_000318_130 Hb_000318_130 Hb_002290_030--Hb_000318_130 Hb_003029_020 Hb_003029_020 Hb_002290_030--Hb_003029_020 Hb_004375_050--Hb_005147_080 Hb_000340_150 Hb_000340_150 Hb_004375_050--Hb_000340_150 Hb_004375_050--Hb_000318_130 Hb_001195_770 Hb_001195_770 Hb_004375_050--Hb_001195_770 Hb_001898_180 Hb_001898_180 Hb_000983_070--Hb_001898_180 Hb_010128_020 Hb_010128_020 Hb_000983_070--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_000983_070--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000983_070--Hb_003124_120 Hb_002053_010 Hb_002053_010 Hb_000983_070--Hb_002053_010 Hb_000510_030 Hb_000510_030 Hb_001711_120--Hb_000510_030 Hb_001711_120--Hb_002053_010 Hb_001711_120--Hb_000983_070 Hb_000392_550 Hb_000392_550 Hb_001711_120--Hb_000392_550 Hb_001369_790 Hb_001369_790 Hb_001711_120--Hb_001369_790 Hb_000506_110 Hb_000506_110 Hb_003462_180--Hb_000506_110 Hb_000023_360 Hb_000023_360 Hb_003462_180--Hb_000023_360 Hb_005656_170 Hb_005656_170 Hb_003462_180--Hb_005656_170 Hb_001511_090 Hb_001511_090 Hb_003462_180--Hb_001511_090 Hb_049575_010 Hb_049575_010 Hb_003462_180--Hb_049575_010 Hb_004644_030 Hb_004644_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_000077_150 Hb_000077_150 Hb_002762_110--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_002762_110--Hb_001214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.3805 11.256 21.8631 12.8315 3.8856 4.56526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6931 16.894 11.0839 7.51221 39.6045

CAGE analysis