Hb_005656_170

Information

Type -
Description -
Location Contig5656: 120818-126888
Sequence    

Annotation

kegg
ID vvi:100249288
description uncharacterized LOC100249288
nr
ID XP_012076300.1
description PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID D7SU48
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g02810 PE=4 SV=1
Gene Ontology
ID GO:0031072
description chaperone protein dnaj-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49027: 121353-126676 , PASA_asmbl_49028: 126691-126802
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_170 0.0 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
2 Hb_003462_180 0.1008192578 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
3 Hb_000506_110 0.1071079328 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
4 Hb_000023_360 0.1083947327 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
5 Hb_027506_040 0.1135120145 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
6 Hb_001511_090 0.1184094923 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
7 Hb_001277_050 0.1226252906 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
8 Hb_001675_140 0.1233279518 - - hypothetical protein L484_026216 [Morus notabilis]
9 Hb_001269_620 0.1248834606 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
10 Hb_000128_060 0.1268827534 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
11 Hb_000307_070 0.1305387129 - - protein kinase, putative [Ricinus communis]
12 Hb_001322_230 0.1311548357 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
13 Hb_001178_010 0.1331850437 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
14 Hb_000088_260 0.134083029 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
15 Hb_003040_040 0.1349265035 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
16 Hb_014497_100 0.1374208073 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
17 Hb_005332_080 0.1383986317 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
18 Hb_001900_140 0.1389387137 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
19 Hb_005883_080 0.1389404879 - - type 2A protein phosphatase-2 [Populus trichocarpa]
20 Hb_049575_010 0.1394013159 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]

Gene co-expression network

sample Hb_005656_170 Hb_005656_170 Hb_003462_180 Hb_003462_180 Hb_005656_170--Hb_003462_180 Hb_000506_110 Hb_000506_110 Hb_005656_170--Hb_000506_110 Hb_000023_360 Hb_000023_360 Hb_005656_170--Hb_000023_360 Hb_027506_040 Hb_027506_040 Hb_005656_170--Hb_027506_040 Hb_001511_090 Hb_001511_090 Hb_005656_170--Hb_001511_090 Hb_001277_050 Hb_001277_050 Hb_005656_170--Hb_001277_050 Hb_003462_180--Hb_000506_110 Hb_003462_180--Hb_000023_360 Hb_001629_090 Hb_001629_090 Hb_003462_180--Hb_001629_090 Hb_003462_180--Hb_001511_090 Hb_049575_010 Hb_049575_010 Hb_003462_180--Hb_049575_010 Hb_002259_170 Hb_002259_170 Hb_000506_110--Hb_002259_170 Hb_000506_110--Hb_001511_090 Hb_000160_140 Hb_000160_140 Hb_000506_110--Hb_000160_140 Hb_008120_040 Hb_008120_040 Hb_000506_110--Hb_008120_040 Hb_001269_370 Hb_001269_370 Hb_000506_110--Hb_001269_370 Hb_073973_090 Hb_073973_090 Hb_000023_360--Hb_073973_090 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020 Hb_000926_080 Hb_000926_080 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_000340_040 Hb_000340_040 Hb_001511_090--Hb_000340_040 Hb_000088_260 Hb_000088_260 Hb_001511_090--Hb_000088_260 Hb_001511_090--Hb_002259_170 Hb_001008_130 Hb_001008_130 Hb_001511_090--Hb_001008_130 Hb_001511_090--Hb_000023_360 Hb_000169_020 Hb_000169_020 Hb_001511_090--Hb_000169_020 Hb_001269_620 Hb_001269_620 Hb_001277_050--Hb_001269_620 Hb_005686_130 Hb_005686_130 Hb_001277_050--Hb_005686_130 Hb_001147_050 Hb_001147_050 Hb_001277_050--Hb_001147_050 Hb_001277_050--Hb_000088_260 Hb_000638_130 Hb_000638_130 Hb_001277_050--Hb_000638_130 Hb_002534_130 Hb_002534_130 Hb_001277_050--Hb_002534_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02059 4.13861 8.35995 4.89077 0.747147 0.601139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11742 4.37566 2.1079 3.3442 7.4592

CAGE analysis