Hb_000398_170

Information

Type -
Description -
Location Contig398: 248579-253302
Sequence    

Annotation

kegg
ID rcu:RCOM_0824990
description virion binding protein, putative
nr
ID XP_012069133.1
description PREDICTED: tobamovirus multiplication protein 1-like [Jatropha curcas]
swissprot
ID Q402F4
description Tobamovirus multiplication protein 1 OS=Nicotiana tabacum GN=TOM1 PE=1 SV=1
trembl
ID B9SIP7
description Virion binding protein, putative OS=Ricinus communis GN=RCOM_0824990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_170 0.0 - - PREDICTED: tobamovirus multiplication protein 1-like [Jatropha curcas]
2 Hb_027506_040 0.0974140825 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
3 Hb_000122_190 0.1177516551 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
4 Hb_005214_170 0.1186960513 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
5 Hb_003266_030 0.1202452309 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
6 Hb_000907_180 0.124648317 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
7 Hb_000116_250 0.1249530393 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
8 Hb_000926_080 0.1250910016 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
9 Hb_001053_060 0.1275113994 - - DHHC-type zinc finger family protein [Theobroma cacao]
10 Hb_001269_620 0.1276315932 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
11 Hb_004218_010 0.1287587712 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_000684_030 0.1293078536 - - syntaxin, putative [Ricinus communis]
13 Hb_001900_140 0.1307546111 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
14 Hb_049575_010 0.1329809237 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
15 Hb_000086_080 0.1339322421 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004965_110 0.1341027273 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
17 Hb_011671_260 0.1350316974 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
18 Hb_000235_070 0.1355029567 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
19 Hb_015967_030 0.1355030337 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
20 Hb_000620_020 0.1366855506 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]

Gene co-expression network

sample Hb_000398_170 Hb_000398_170 Hb_027506_040 Hb_027506_040 Hb_000398_170--Hb_027506_040 Hb_000122_190 Hb_000122_190 Hb_000398_170--Hb_000122_190 Hb_005214_170 Hb_005214_170 Hb_000398_170--Hb_005214_170 Hb_003266_030 Hb_003266_030 Hb_000398_170--Hb_003266_030 Hb_000907_180 Hb_000907_180 Hb_000398_170--Hb_000907_180 Hb_000116_250 Hb_000116_250 Hb_000398_170--Hb_000116_250 Hb_000926_080 Hb_000926_080 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_001900_140 Hb_001900_140 Hb_000122_190--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000122_190--Hb_001587_180 Hb_007002_020 Hb_007002_020 Hb_000122_190--Hb_007002_020 Hb_004965_110 Hb_004965_110 Hb_000122_190--Hb_004965_110 Hb_000122_190--Hb_027506_040 Hb_000003_780 Hb_000003_780 Hb_000122_190--Hb_000003_780 Hb_000330_090 Hb_000330_090 Hb_005214_170--Hb_000330_090 Hb_007199_020 Hb_007199_020 Hb_005214_170--Hb_007199_020 Hb_005946_150 Hb_005946_150 Hb_005214_170--Hb_005946_150 Hb_000193_260 Hb_000193_260 Hb_005214_170--Hb_000193_260 Hb_000331_420 Hb_000331_420 Hb_005214_170--Hb_000331_420 Hb_001804_090 Hb_001804_090 Hb_005214_170--Hb_001804_090 Hb_007904_230 Hb_007904_230 Hb_003266_030--Hb_007904_230 Hb_003266_030--Hb_011671_260 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_003266_030--Hb_000926_080 Hb_000907_180--Hb_003266_030 Hb_004452_120 Hb_004452_120 Hb_000907_180--Hb_004452_120 Hb_001882_010 Hb_001882_010 Hb_000907_180--Hb_001882_010 Hb_005127_030 Hb_005127_030 Hb_000907_180--Hb_005127_030 Hb_001022_030 Hb_001022_030 Hb_000907_180--Hb_001022_030 Hb_012150_030 Hb_012150_030 Hb_000907_180--Hb_012150_030 Hb_138585_030 Hb_138585_030 Hb_000116_250--Hb_138585_030 Hb_001390_100 Hb_001390_100 Hb_000116_250--Hb_001390_100 Hb_000585_110 Hb_000585_110 Hb_000116_250--Hb_000585_110 Hb_003355_010 Hb_003355_010 Hb_000116_250--Hb_003355_010 Hb_003440_020 Hb_003440_020 Hb_000116_250--Hb_003440_020 Hb_000007_090 Hb_000007_090 Hb_000116_250--Hb_000007_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.273508 0.520895 1.93109 0.945508 0.0700429 0.52178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.586664 0.629169 0.769912 0.590979 1.3688

CAGE analysis