Hb_000122_190

Information

Type -
Description -
Location Contig122: 124808-129353
Sequence    

Annotation

kegg
ID rcu:RCOM_0687720
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative
nr
ID XP_012086589.1
description PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S484
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative OS=Ricinus communis GN=RCOM_0687720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06664: 124882-129348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_190 0.0 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
2 Hb_001900_140 0.083306147 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
3 Hb_001587_180 0.1013983161 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
4 Hb_007002_020 0.106927417 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
5 Hb_004965_110 0.1071064411 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
6 Hb_027506_040 0.1105577365 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
7 Hb_000003_780 0.1110261723 - - hexokinase [Manihot esculenta]
8 Hb_002333_070 0.1143532703 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
9 Hb_001541_110 0.1146676297 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_006132_090 0.115373917 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
11 Hb_003266_030 0.1159958538 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
12 Hb_007558_090 0.1163670971 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_001287_040 0.1167643464 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
14 Hb_000926_080 0.1168073197 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
15 Hb_000398_170 0.1177516551 - - PREDICTED: tobamovirus multiplication protein 1-like [Jatropha curcas]
16 Hb_000189_570 0.1177715125 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
17 Hb_003411_090 0.1180309994 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
18 Hb_171554_010 0.1186161396 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
19 Hb_001804_090 0.1244411659 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
20 Hb_002687_120 0.124764224 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000122_190 Hb_000122_190 Hb_001900_140 Hb_001900_140 Hb_000122_190--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000122_190--Hb_001587_180 Hb_007002_020 Hb_007002_020 Hb_000122_190--Hb_007002_020 Hb_004965_110 Hb_004965_110 Hb_000122_190--Hb_004965_110 Hb_027506_040 Hb_027506_040 Hb_000122_190--Hb_027506_040 Hb_000003_780 Hb_000003_780 Hb_000122_190--Hb_000003_780 Hb_001900_140--Hb_001587_180 Hb_006132_090 Hb_006132_090 Hb_001900_140--Hb_006132_090 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_001900_140--Hb_007904_230 Hb_005946_040 Hb_005946_040 Hb_001900_140--Hb_005946_040 Hb_001287_040 Hb_001287_040 Hb_001587_180--Hb_001287_040 Hb_001587_180--Hb_000003_780 Hb_001587_180--Hb_005946_040 Hb_001935_100 Hb_001935_100 Hb_001587_180--Hb_001935_100 Hb_001541_110 Hb_001541_110 Hb_001587_180--Hb_001541_110 Hb_007002_020--Hb_001287_040 Hb_007002_020--Hb_006132_090 Hb_007002_020--Hb_001900_140 Hb_007002_020--Hb_000003_780 Hb_000811_070 Hb_000811_070 Hb_007002_020--Hb_000811_070 Hb_007975_060 Hb_007975_060 Hb_007002_020--Hb_007975_060 Hb_004965_110--Hb_003266_030 Hb_004965_110--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_004965_110--Hb_011671_260 Hb_004965_110--Hb_006132_090 Hb_000926_080 Hb_000926_080 Hb_004965_110--Hb_000926_080 Hb_004965_110--Hb_001900_140 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_000003_780--Hb_005946_040 Hb_002874_180 Hb_002874_180 Hb_000003_780--Hb_002874_180 Hb_000003_780--Hb_001900_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.02537 5.64623 24.899 9.83859 2.16574 4.14152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1621 10.843 12.8165 6.21768 15.113

CAGE analysis