Hb_007558_090

Information

Type -
Description -
Location Contig7558: 67466-73971
Sequence    

Annotation

kegg
ID rcu:RCOM_1058560
description ribosomal protein S6 kinase, putative (EC:2.7.11.13)
nr
ID XP_012091031.1
description PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9LZV4
description Serine/threonine-protein kinase STN8, chloroplastic OS=Arabidopsis thaliana GN=STN8 PE=2 SV=1
trembl
ID A0A067JQN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00641 PE=4 SV=1
Gene Ontology
ID GO:0005840
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57034: 67456-70157 , PASA_asmbl_57035: 70198-70309 , PASA_asmbl_57036: 70708-73508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007558_090 0.0 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_029622_120 0.0668274472 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
3 Hb_001900_140 0.0731980245 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
4 Hb_005946_040 0.0782412813 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
5 Hb_000537_100 0.079812741 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
6 Hb_049575_010 0.0810555521 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
7 Hb_000926_080 0.0860900985 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
8 Hb_015967_030 0.0977581501 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
9 Hb_001587_180 0.0988668456 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
10 Hb_073973_090 0.0993972674 - - Aminotransferase ybdL, putative [Ricinus communis]
11 Hb_002631_240 0.1006126949 - - JHL17M24.3 [Jatropha curcas]
12 Hb_004965_110 0.1021877333 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
13 Hb_007904_230 0.1028608425 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
14 Hb_001178_010 0.1029266952 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
15 Hb_001703_040 0.1054318501 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
16 Hb_003462_180 0.1055943753 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
17 Hb_006907_060 0.107494649 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_000003_780 0.1077168224 - - hexokinase [Manihot esculenta]
19 Hb_001541_110 0.1078003005 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_005332_080 0.1084449652 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007558_090 Hb_007558_090 Hb_029622_120 Hb_029622_120 Hb_007558_090--Hb_029622_120 Hb_001900_140 Hb_001900_140 Hb_007558_090--Hb_001900_140 Hb_005946_040 Hb_005946_040 Hb_007558_090--Hb_005946_040 Hb_000537_100 Hb_000537_100 Hb_007558_090--Hb_000537_100 Hb_049575_010 Hb_049575_010 Hb_007558_090--Hb_049575_010 Hb_000926_080 Hb_000926_080 Hb_007558_090--Hb_000926_080 Hb_029622_120--Hb_000537_100 Hb_029622_120--Hb_005946_040 Hb_000723_030 Hb_000723_030 Hb_029622_120--Hb_000723_030 Hb_029622_120--Hb_001900_140 Hb_002435_100 Hb_002435_100 Hb_029622_120--Hb_002435_100 Hb_001587_180 Hb_001587_180 Hb_001900_140--Hb_001587_180 Hb_006132_090 Hb_006132_090 Hb_001900_140--Hb_006132_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_001900_140--Hb_007904_230 Hb_001900_140--Hb_005946_040 Hb_005946_040--Hb_000537_100 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_002631_240 Hb_002631_240 Hb_005946_040--Hb_002631_240 Hb_073973_090 Hb_073973_090 Hb_000537_100--Hb_073973_090 Hb_000537_100--Hb_002631_240 Hb_002316_140 Hb_002316_140 Hb_000537_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_000537_100--Hb_001178_010 Hb_049575_010--Hb_073973_090 Hb_000330_090 Hb_000330_090 Hb_049575_010--Hb_000330_090 Hb_049575_010--Hb_007904_230 Hb_001269_620 Hb_001269_620 Hb_049575_010--Hb_001269_620 Hb_000364_050 Hb_000364_050 Hb_049575_010--Hb_000364_050 Hb_000200_300 Hb_000200_300 Hb_000926_080--Hb_000200_300 Hb_000926_080--Hb_003266_030 Hb_000086_080 Hb_000086_080 Hb_000926_080--Hb_000086_080 Hb_004965_110 Hb_004965_110 Hb_000926_080--Hb_004965_110 Hb_006907_060 Hb_006907_060 Hb_000926_080--Hb_006907_060 Hb_027506_040 Hb_027506_040 Hb_000926_080--Hb_027506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.67149 12.2086 35.2614 14.9808 6.7517 7.51087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.36324 21.998 14.0533 9.434 25.4247

CAGE analysis