Hb_049575_010

Information

Type -
Description -
Location Contig49575: 5724-15906
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07880g
description POPTRDRAFT_553916; carbamoyl phosphate synthetase a family protein
nr
ID XP_006368971.1
description hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
swissprot
ID Q9LVW7
description Carbamoyl-phosphate synthase small chain, chloroplastic OS=Arabidopsis thaliana GN=CARA PE=1 SV=1
trembl
ID U5GPT2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s15330g PE=3 SV=1
Gene Ontology
ID GO:0004088
description carbamoyl-phosphate synthase small chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45458: 5628-15589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049575_010 0.0 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
2 Hb_073973_090 0.0659240126 - - Aminotransferase ybdL, putative [Ricinus communis]
3 Hb_000330_090 0.0731086843 - - ornithine carbamoyltransferase, putative [Ricinus communis]
4 Hb_007904_230 0.0738716055 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
5 Hb_001269_620 0.078301197 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
6 Hb_007558_090 0.0810555521 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000364_050 0.0850061139 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
8 Hb_029622_120 0.0858885777 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
9 Hb_001269_130 0.0862818438 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
10 Hb_000086_080 0.0867741066 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005946_040 0.0881443651 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
12 Hb_001900_140 0.0882939115 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
13 Hb_006907_060 0.0889918282 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
14 Hb_000537_100 0.0902973159 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
15 Hb_000023_360 0.0903893627 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
16 Hb_001703_040 0.0904193405 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
17 Hb_003266_030 0.090514022 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
18 Hb_000926_080 0.0909797649 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
19 Hb_000088_260 0.0912334241 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
20 Hb_002173_070 0.091382958 - - MRG family protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_049575_010 Hb_049575_010 Hb_073973_090 Hb_073973_090 Hb_049575_010--Hb_073973_090 Hb_000330_090 Hb_000330_090 Hb_049575_010--Hb_000330_090 Hb_007904_230 Hb_007904_230 Hb_049575_010--Hb_007904_230 Hb_001269_620 Hb_001269_620 Hb_049575_010--Hb_001269_620 Hb_007558_090 Hb_007558_090 Hb_049575_010--Hb_007558_090 Hb_000364_050 Hb_000364_050 Hb_049575_010--Hb_000364_050 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_000330_090--Hb_007904_230 Hb_007199_020 Hb_007199_020 Hb_000330_090--Hb_007199_020 Hb_007904_230--Hb_000364_050 Hb_003266_030 Hb_003266_030 Hb_007904_230--Hb_003266_030 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_001277_050 Hb_001277_050 Hb_001269_620--Hb_001277_050 Hb_005686_130 Hb_005686_130 Hb_001269_620--Hb_005686_130 Hb_000088_260 Hb_000088_260 Hb_001269_620--Hb_000088_260 Hb_001147_050 Hb_001147_050 Hb_001269_620--Hb_001147_050 Hb_000235_070 Hb_000235_070 Hb_001269_620--Hb_000235_070 Hb_029622_120 Hb_029622_120 Hb_007558_090--Hb_029622_120 Hb_001900_140 Hb_001900_140 Hb_007558_090--Hb_001900_140 Hb_005946_040 Hb_005946_040 Hb_007558_090--Hb_005946_040 Hb_007558_090--Hb_000537_100 Hb_000926_080 Hb_000926_080 Hb_007558_090--Hb_000926_080 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_000364_050--Hb_001269_130 Hb_012733_040 Hb_012733_040 Hb_000364_050--Hb_012733_040 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.08471 7.19164 17.219 10.6872 3.747 4.7384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94333 10.785 6.78211 8.91317 15.2903

CAGE analysis