Hb_000088_260

Information

Type -
Description -
Location Contig88: 345368-349614
Sequence    

Annotation

kegg
ID rcu:RCOM_0685900
description ATP binding protein, putative (EC:2.7.1.74)
nr
ID XP_012075781.1
description PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
swissprot
ID P27707
description Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=1 SV=1
trembl
ID A0A067KF25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11178 PE=4 SV=1
Gene Ontology
ID GO:0005634
description deoxycytidine kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61400: 345168-349581 , PASA_asmbl_61401: 348312-348706 , PASA_asmbl_61402: 348872-349126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_260 0.0 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
2 Hb_000270_480 0.0685866091 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
3 Hb_001269_620 0.0697943124 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
4 Hb_000128_060 0.0717947669 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
5 Hb_001511_090 0.0767051431 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
6 Hb_001117_110 0.0785249275 - - PREDICTED: dynamin-2A [Jatropha curcas]
7 Hb_001141_240 0.0810648817 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
8 Hb_030736_040 0.0823980648 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
9 Hb_000035_350 0.0837205651 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
10 Hb_001307_100 0.0864468013 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_000510_170 0.0866401621 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
12 Hb_000358_020 0.0895748466 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
13 Hb_116349_120 0.0897423637 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000788_030 0.0901213847 - - PREDICTED: dynamin-2A [Jatropha curcas]
15 Hb_055690_010 0.0905944772 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
16 Hb_049575_010 0.0912334241 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
17 Hb_005686_130 0.0915649364 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
18 Hb_002259_170 0.0917369226 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
19 Hb_000007_090 0.0929196427 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
20 Hb_000023_360 0.0934848549 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000088_260 Hb_000088_260 Hb_000270_480 Hb_000270_480 Hb_000088_260--Hb_000270_480 Hb_001269_620 Hb_001269_620 Hb_000088_260--Hb_001269_620 Hb_000128_060 Hb_000128_060 Hb_000088_260--Hb_000128_060 Hb_001511_090 Hb_001511_090 Hb_000088_260--Hb_001511_090 Hb_001117_110 Hb_001117_110 Hb_000088_260--Hb_001117_110 Hb_001141_240 Hb_001141_240 Hb_000088_260--Hb_001141_240 Hb_000270_480--Hb_000128_060 Hb_025194_050 Hb_025194_050 Hb_000270_480--Hb_025194_050 Hb_001675_140 Hb_001675_140 Hb_000270_480--Hb_001675_140 Hb_007545_010 Hb_007545_010 Hb_000270_480--Hb_007545_010 Hb_000023_360 Hb_000023_360 Hb_000270_480--Hb_000023_360 Hb_001277_050 Hb_001277_050 Hb_001269_620--Hb_001277_050 Hb_005686_130 Hb_005686_130 Hb_001269_620--Hb_005686_130 Hb_049575_010 Hb_049575_010 Hb_001269_620--Hb_049575_010 Hb_001147_050 Hb_001147_050 Hb_001269_620--Hb_001147_050 Hb_000235_070 Hb_000235_070 Hb_001269_620--Hb_000235_070 Hb_073973_090 Hb_073973_090 Hb_000128_060--Hb_073973_090 Hb_000128_060--Hb_000023_360 Hb_000128_060--Hb_001511_090 Hb_001105_040 Hb_001105_040 Hb_000128_060--Hb_001105_040 Hb_000340_040 Hb_000340_040 Hb_001511_090--Hb_000340_040 Hb_002259_170 Hb_002259_170 Hb_001511_090--Hb_002259_170 Hb_001008_130 Hb_001008_130 Hb_001511_090--Hb_001008_130 Hb_001511_090--Hb_000023_360 Hb_000169_020 Hb_000169_020 Hb_001511_090--Hb_000169_020 Hb_005694_060 Hb_005694_060 Hb_001117_110--Hb_005694_060 Hb_030736_040 Hb_030736_040 Hb_001117_110--Hb_030736_040 Hb_015884_020 Hb_015884_020 Hb_001117_110--Hb_015884_020 Hb_116349_120 Hb_116349_120 Hb_001117_110--Hb_116349_120 Hb_106890_010 Hb_106890_010 Hb_001117_110--Hb_106890_010 Hb_006100_020 Hb_006100_020 Hb_001141_240--Hb_006100_020 Hb_000815_300 Hb_000815_300 Hb_001141_240--Hb_000815_300 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_000139_080 Hb_000139_080 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_006970_020 Hb_006970_020 Hb_001141_240--Hb_006970_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69944 8.80188 13.6934 11.9576 2.58932 3.59222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.43768 6.20094 5.67021 7.13992 15.4131

CAGE analysis