Hb_005686_130

Information

Type rubber biosynthesis
Description Gene Name: Isopentenyl-diphosphate delta isomerase
Location Contig5686: 89284-92855
Sequence    

Annotation

kegg
ID rcu:RCOM_1078490
description isopentenyl-diphosphate delta isomerase, putative (EC:5.3.3.2)
nr
ID AFJ74333.1
description isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
swissprot
ID Q39471
description Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2
trembl
ID A9ZN04
description Isopentenyl-diphosphate Delta-isomerase OS=Hevea brasiliensis GN=HbIPI II PE=2 SV=1
Gene Ontology
ID GO:0004452
description isopentenyl pyrophosphate isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49210: 89318-92876 , PASA_asmbl_49211: 90332-90702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_130 0.0 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
2 Hb_001269_620 0.0694731256 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
3 Hb_000638_130 0.0753819113 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
4 Hb_001277_050 0.0815866376 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
5 Hb_002534_130 0.0827696416 - - membrane associated ring finger 1,8, putative [Ricinus communis]
6 Hb_000510_170 0.0884478001 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
7 Hb_000088_260 0.0915649364 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
8 Hb_002445_030 0.0929678067 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
9 Hb_000116_250 0.0941667687 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
10 Hb_006438_020 0.0964352579 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
11 Hb_000330_090 0.0987736179 - - ornithine carbamoyltransferase, putative [Ricinus communis]
12 Hb_000358_020 0.1004157277 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
13 Hb_002232_430 0.1014044982 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
14 Hb_002693_030 0.1022163017 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
15 Hb_003440_020 0.1032656663 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_049575_010 0.1035099986 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
17 Hb_000375_300 0.1041700591 - - PREDICTED: cyanate hydratase [Jatropha curcas]
18 Hb_000173_130 0.1043465218 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
19 Hb_000979_130 0.1052204999 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
20 Hb_001014_060 0.1062235502 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]

Gene co-expression network

sample Hb_005686_130 Hb_005686_130 Hb_001269_620 Hb_001269_620 Hb_005686_130--Hb_001269_620 Hb_000638_130 Hb_000638_130 Hb_005686_130--Hb_000638_130 Hb_001277_050 Hb_001277_050 Hb_005686_130--Hb_001277_050 Hb_002534_130 Hb_002534_130 Hb_005686_130--Hb_002534_130 Hb_000510_170 Hb_000510_170 Hb_005686_130--Hb_000510_170 Hb_000088_260 Hb_000088_260 Hb_005686_130--Hb_000088_260 Hb_001269_620--Hb_001277_050 Hb_001269_620--Hb_000088_260 Hb_049575_010 Hb_049575_010 Hb_001269_620--Hb_049575_010 Hb_001147_050 Hb_001147_050 Hb_001269_620--Hb_001147_050 Hb_000235_070 Hb_000235_070 Hb_001269_620--Hb_000235_070 Hb_000025_350 Hb_000025_350 Hb_000638_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000638_130--Hb_001014_060 Hb_000638_130--Hb_000510_170 Hb_003913_130 Hb_003913_130 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010 Hb_001277_050--Hb_001147_050 Hb_001277_050--Hb_000088_260 Hb_001277_050--Hb_000638_130 Hb_001277_050--Hb_002534_130 Hb_002693_030 Hb_002693_030 Hb_002534_130--Hb_002693_030 Hb_000193_260 Hb_000193_260 Hb_002534_130--Hb_000193_260 Hb_002534_130--Hb_001269_620 Hb_015778_040 Hb_015778_040 Hb_002534_130--Hb_015778_040 Hb_116349_120 Hb_116349_120 Hb_000510_170--Hb_116349_120 Hb_001141_240 Hb_001141_240 Hb_000510_170--Hb_001141_240 Hb_000979_130 Hb_000979_130 Hb_000510_170--Hb_000979_130 Hb_000666_010 Hb_000666_010 Hb_000510_170--Hb_000666_010 Hb_002445_030 Hb_002445_030 Hb_000510_170--Hb_002445_030 Hb_000270_480 Hb_000270_480 Hb_000088_260--Hb_000270_480 Hb_000128_060 Hb_000128_060 Hb_000088_260--Hb_000128_060 Hb_001511_090 Hb_001511_090 Hb_000088_260--Hb_001511_090 Hb_001117_110 Hb_001117_110 Hb_000088_260--Hb_001117_110 Hb_000088_260--Hb_001141_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37483 19.1442 43.283 36.3244 6.78895 7.54837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.90022 19.3432 19.9413 29.5414 35.2547

CAGE analysis