Hb_015778_040

Information

Type -
Description -
Location Contig15778: 64933-66388
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05150g
description POPTRDRAFT_772684; hypothetical protein
nr
ID XP_012093029.1
description PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05909 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015778_040 0.0 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
2 Hb_000589_170 0.0885676387 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
3 Hb_001155_050 0.0920534431 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
4 Hb_002534_130 0.092878855 - - membrane associated ring finger 1,8, putative [Ricinus communis]
5 Hb_001729_020 0.1032979013 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
6 Hb_002686_150 0.1106954553 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_000098_180 0.1143230168 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
8 Hb_000375_060 0.1221618281 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
9 Hb_001221_580 0.1234169577 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
10 Hb_000979_140 0.1235162465 - - kinase family protein [Populus trichocarpa]
11 Hb_026198_010 0.1236190307 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
12 Hb_011671_340 0.1250836253 - - small GTPase [Hevea brasiliensis]
13 Hb_012762_040 0.1263222957 - - big map kinase/bmk, putative [Ricinus communis]
14 Hb_003428_090 0.1267121759 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
15 Hb_000193_260 0.12693137 - - PREDICTED: protein NEN1 [Jatropha curcas]
16 Hb_006438_020 0.1276649602 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
17 Hb_000757_130 0.1294398882 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000197_180 0.1295510276 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
19 Hb_023091_010 0.1299500551 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
20 Hb_002960_090 0.1299974639 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_015778_040 Hb_015778_040 Hb_000589_170 Hb_000589_170 Hb_015778_040--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_015778_040--Hb_001155_050 Hb_002534_130 Hb_002534_130 Hb_015778_040--Hb_002534_130 Hb_001729_020 Hb_001729_020 Hb_015778_040--Hb_001729_020 Hb_002686_150 Hb_002686_150 Hb_015778_040--Hb_002686_150 Hb_000098_180 Hb_000098_180 Hb_015778_040--Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_011671_340 Hb_011671_340 Hb_001155_050--Hb_011671_340 Hb_007426_220 Hb_007426_220 Hb_001155_050--Hb_007426_220 Hb_000818_120 Hb_000818_120 Hb_001155_050--Hb_000818_120 Hb_001155_050--Hb_000589_170 Hb_029253_010 Hb_029253_010 Hb_001155_050--Hb_029253_010 Hb_002693_030 Hb_002693_030 Hb_002534_130--Hb_002693_030 Hb_005686_130 Hb_005686_130 Hb_002534_130--Hb_005686_130 Hb_000193_260 Hb_000193_260 Hb_002534_130--Hb_000193_260 Hb_001269_620 Hb_001269_620 Hb_002534_130--Hb_001269_620 Hb_001277_050 Hb_001277_050 Hb_002534_130--Hb_001277_050 Hb_001729_020--Hb_000979_140 Hb_001729_020--Hb_002686_150 Hb_000711_010 Hb_000711_010 Hb_001729_020--Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_001729_020--Hb_002349_030 Hb_003428_090 Hb_003428_090 Hb_001729_020--Hb_003428_090 Hb_002965_050 Hb_002965_050 Hb_001729_020--Hb_002965_050 Hb_002686_150--Hb_003428_090 Hb_000156_090 Hb_000156_090 Hb_002686_150--Hb_000156_090 Hb_002686_150--Hb_002965_050 Hb_026198_010 Hb_026198_010 Hb_002686_150--Hb_026198_010 Hb_060094_010 Hb_060094_010 Hb_002686_150--Hb_060094_010 Hb_004218_130 Hb_004218_130 Hb_000098_180--Hb_004218_130 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.545182 3.07688 5.93816 4.36341 0.25646 1.01238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.318 1.68437 1.02888 2.52252 2.28618

CAGE analysis