Hb_001155_050

Information

Type -
Description -
Location Contig1155: 79205-83431
Sequence    

Annotation

kegg
ID rcu:RCOM_1113660
description nucleic acid binding protein, putative
nr
ID XP_012077809.1
description PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
swissprot
ID Q9ZVI3
description KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1
trembl
ID A0A067LEL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17280 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at2g38610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04680: 79224-83415
cDNA
(Sanger)
(ID:Location)		 006_I10.ab1: 81124-83408 , 016_E13.ab1: 80889-83415 , 046_I20.ab1: 80621-83415 , 050_D04.ab1: 80894-83415

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001155_050 0.0 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
2 Hb_011671_340 0.0700814797 - - small GTPase [Hevea brasiliensis]
3 Hb_015778_040 0.0920534431 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
4 Hb_007426_220 0.109073065 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
5 Hb_000818_120 0.1105408606 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000589_170 0.1139172936 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
7 Hb_029253_010 0.1146348031 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
8 Hb_002249_170 0.1156663094 - - copine, putative [Ricinus communis]
9 Hb_013405_070 0.1158564064 - - ferric-chelate reductase, putative [Ricinus communis]
10 Hb_004679_040 0.1196618366 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
11 Hb_012762_040 0.1202443481 - - big map kinase/bmk, putative [Ricinus communis]
12 Hb_001863_160 0.121210587 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
13 Hb_000757_130 0.1216421947 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005701_110 0.1252514858 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
15 Hb_001198_080 0.1289503488 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
16 Hb_001511_030 0.1297435385 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
17 Hb_000000_480 0.1315464989 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
18 Hb_001729_020 0.1319641823 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
19 Hb_000046_310 0.1329674149 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
20 Hb_005903_020 0.1343459731 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_001155_050 Hb_001155_050 Hb_011671_340 Hb_011671_340 Hb_001155_050--Hb_011671_340 Hb_015778_040 Hb_015778_040 Hb_001155_050--Hb_015778_040 Hb_007426_220 Hb_007426_220 Hb_001155_050--Hb_007426_220 Hb_000818_120 Hb_000818_120 Hb_001155_050--Hb_000818_120 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_029253_010 Hb_029253_010 Hb_001155_050--Hb_029253_010 Hb_013405_070 Hb_013405_070 Hb_011671_340--Hb_013405_070 Hb_000800_020 Hb_000800_020 Hb_011671_340--Hb_000800_020 Hb_011671_340--Hb_007426_220 Hb_003271_040 Hb_003271_040 Hb_011671_340--Hb_003271_040 Hb_011671_340--Hb_029253_010 Hb_015778_040--Hb_000589_170 Hb_002534_130 Hb_002534_130 Hb_015778_040--Hb_002534_130 Hb_001729_020 Hb_001729_020 Hb_015778_040--Hb_001729_020 Hb_002686_150 Hb_002686_150 Hb_015778_040--Hb_002686_150 Hb_000098_180 Hb_000098_180 Hb_015778_040--Hb_000098_180 Hb_005903_020 Hb_005903_020 Hb_007426_220--Hb_005903_020 Hb_000620_020 Hb_000620_020 Hb_007426_220--Hb_000620_020 Hb_001511_030 Hb_001511_030 Hb_007426_220--Hb_001511_030 Hb_002871_040 Hb_002871_040 Hb_007426_220--Hb_002871_040 Hb_001198_080 Hb_001198_080 Hb_000818_120--Hb_001198_080 Hb_003106_200 Hb_003106_200 Hb_000818_120--Hb_003106_200 Hb_000818_120--Hb_001511_030 Hb_000046_310 Hb_000046_310 Hb_000818_120--Hb_000046_310 Hb_002249_170 Hb_002249_170 Hb_000818_120--Hb_002249_170 Hb_000589_170--Hb_000098_180 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_005357_110 Hb_005357_110 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.88237 16.437 42.2072 26.1441 2.08632 3.74219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7811 8.97749 6.78212 9.78877 11.5526

CAGE analysis