Hb_000620_020

Information

Type -
Description -
Location Contig620: 26093-33439
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18100g
description POPTRDRAFT_724233; hypothetical protein
nr
ID XP_012092142.1
description PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
swissprot
ID B4RRY8
description Ribosomal RNA large subunit methyltransferase I OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rlmI PE=3 SV=1
trembl
ID B9HYB4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18100g PE=4 SV=2
Gene Ontology
ID GO:0005886
description ribosomal rna large subunit methyltransferase i

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51494: 27140-30052 , PASA_asmbl_51495: 31077-33312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000620_020 0.0 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
2 Hb_002871_040 0.0991297916 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
3 Hb_001102_070 0.1046970853 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
4 Hb_101334_020 0.1069560873 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
5 Hb_002783_190 0.107380769 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
6 Hb_006438_020 0.1078233878 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
7 Hb_007426_220 0.1089976237 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
8 Hb_002486_060 0.1099074218 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
9 Hb_017193_010 0.1128039619 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
10 Hb_000116_250 0.1128492135 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
11 Hb_001390_100 0.1147493321 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
12 Hb_002627_040 0.1203326163 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
13 Hb_021596_020 0.125006967 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
14 Hb_000926_060 0.1253727365 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000579_080 0.1254720231 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
16 Hb_000331_570 0.1274111396 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
17 Hb_002684_020 0.1326882877 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
18 Hb_061256_010 0.133378906 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
19 Hb_000086_270 0.1348848274 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
20 Hb_138585_030 0.1350884293 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]

Gene co-expression network

sample Hb_000620_020 Hb_000620_020 Hb_002871_040 Hb_002871_040 Hb_000620_020--Hb_002871_040 Hb_001102_070 Hb_001102_070 Hb_000620_020--Hb_001102_070 Hb_101334_020 Hb_101334_020 Hb_000620_020--Hb_101334_020 Hb_002783_190 Hb_002783_190 Hb_000620_020--Hb_002783_190 Hb_006438_020 Hb_006438_020 Hb_000620_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_000620_020--Hb_007426_220 Hb_003835_110 Hb_003835_110 Hb_002871_040--Hb_003835_110 Hb_017193_010 Hb_017193_010 Hb_002871_040--Hb_017193_010 Hb_011381_040 Hb_011381_040 Hb_002871_040--Hb_011381_040 Hb_002627_040 Hb_002627_040 Hb_002871_040--Hb_002627_040 Hb_000579_080 Hb_000579_080 Hb_002871_040--Hb_000579_080 Hb_004032_320 Hb_004032_320 Hb_001102_070--Hb_004032_320 Hb_001102_070--Hb_000579_080 Hb_000880_070 Hb_000880_070 Hb_001102_070--Hb_000880_070 Hb_002684_020 Hb_002684_020 Hb_001102_070--Hb_002684_020 Hb_016448_010 Hb_016448_010 Hb_001102_070--Hb_016448_010 Hb_000086_270 Hb_000086_270 Hb_001102_070--Hb_000086_270 Hb_000230_530 Hb_000230_530 Hb_101334_020--Hb_000230_530 Hb_001390_100 Hb_001390_100 Hb_101334_020--Hb_001390_100 Hb_003529_040 Hb_003529_040 Hb_101334_020--Hb_003529_040 Hb_001009_140 Hb_001009_140 Hb_101334_020--Hb_001009_140 Hb_101334_020--Hb_017193_010 Hb_009296_020 Hb_009296_020 Hb_101334_020--Hb_009296_020 Hb_000025_540 Hb_000025_540 Hb_002783_190--Hb_000025_540 Hb_138585_030 Hb_138585_030 Hb_002783_190--Hb_138585_030 Hb_002783_190--Hb_002627_040 Hb_001279_020 Hb_001279_020 Hb_002783_190--Hb_001279_020 Hb_001279_090 Hb_001279_090 Hb_002783_190--Hb_001279_090 Hb_012633_050 Hb_012633_050 Hb_006438_020--Hb_012633_050 Hb_002445_030 Hb_002445_030 Hb_006438_020--Hb_002445_030 Hb_002687_180 Hb_002687_180 Hb_006438_020--Hb_002687_180 Hb_011716_010 Hb_011716_010 Hb_006438_020--Hb_011716_010 Hb_021596_020 Hb_021596_020 Hb_006438_020--Hb_021596_020 Hb_061256_010 Hb_061256_010 Hb_006438_020--Hb_061256_010 Hb_005903_020 Hb_005903_020 Hb_007426_220--Hb_005903_020 Hb_011671_340 Hb_011671_340 Hb_007426_220--Hb_011671_340 Hb_001155_050 Hb_001155_050 Hb_007426_220--Hb_001155_050 Hb_001511_030 Hb_001511_030 Hb_007426_220--Hb_001511_030 Hb_007426_220--Hb_002871_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.545811 1.52482 5.63749 2.07973 0.574005 1.39706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.628058 0.962188 1.56043 2.28524 3.14874

CAGE analysis