Hb_003529_040

Information

Type -
Description -
Location Contig3529: 53994-59685
Sequence    

Annotation

kegg
ID cit:102610975
description ATP phosphoribosyltransferase 2, chloroplastic-like
nr
ID XP_012066644.1
description PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q8GSJ1
description ATP phosphoribosyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HISN1B PE=1 SV=1
trembl
ID A0A067L1W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00214 PE=4 SV=1
Gene Ontology
ID GO:0005737
description atp phosphoribosyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36641: 54906-55383 , PASA_asmbl_36642: 53985-59438 , PASA_asmbl_36643: 58738-58991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_040 0.0 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
2 Hb_101334_020 0.0922116697 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
3 Hb_000230_530 0.1134075932 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002627_040 0.1182514694 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
5 Hb_001390_100 0.1204880685 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
6 Hb_000331_570 0.1257713593 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
7 Hb_017193_010 0.1345850189 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
8 Hb_005588_100 0.1352500112 - - protein phosphatase, putative [Ricinus communis]
9 Hb_000406_030 0.136171842 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
10 Hb_000926_060 0.1366327417 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009296_020 0.1398117064 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
12 Hb_000620_020 0.1404507083 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
13 Hb_002871_040 0.1409830474 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
14 Hb_002942_140 0.1416197717 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
15 Hb_070624_010 0.142172808 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
16 Hb_000116_250 0.1470295279 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
17 Hb_002687_160 0.147186071 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
18 Hb_002486_060 0.1478720342 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
19 Hb_001587_040 0.1480458591 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
20 Hb_005527_060 0.149667757 - - malic enzyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_003529_040 Hb_003529_040 Hb_101334_020 Hb_101334_020 Hb_003529_040--Hb_101334_020 Hb_000230_530 Hb_000230_530 Hb_003529_040--Hb_000230_530 Hb_002627_040 Hb_002627_040 Hb_003529_040--Hb_002627_040 Hb_001390_100 Hb_001390_100 Hb_003529_040--Hb_001390_100 Hb_000331_570 Hb_000331_570 Hb_003529_040--Hb_000331_570 Hb_017193_010 Hb_017193_010 Hb_003529_040--Hb_017193_010 Hb_101334_020--Hb_000230_530 Hb_101334_020--Hb_001390_100 Hb_001009_140 Hb_001009_140 Hb_101334_020--Hb_001009_140 Hb_101334_020--Hb_017193_010 Hb_009296_020 Hb_009296_020 Hb_101334_020--Hb_009296_020 Hb_000230_530--Hb_009296_020 Hb_002010_090 Hb_002010_090 Hb_000230_530--Hb_002010_090 Hb_000594_060 Hb_000594_060 Hb_000230_530--Hb_000594_060 Hb_000510_190 Hb_000510_190 Hb_000230_530--Hb_000510_190 Hb_000496_130 Hb_000496_130 Hb_000230_530--Hb_000496_130 Hb_003680_220 Hb_003680_220 Hb_002627_040--Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_002627_040--Hb_008725_270 Hb_002687_160 Hb_002687_160 Hb_002627_040--Hb_002687_160 Hb_000025_540 Hb_000025_540 Hb_002627_040--Hb_000025_540 Hb_138585_030 Hb_138585_030 Hb_002627_040--Hb_138585_030 Hb_070624_010 Hb_070624_010 Hb_002627_040--Hb_070624_010 Hb_000116_250 Hb_000116_250 Hb_001390_100--Hb_000116_250 Hb_025194_090 Hb_025194_090 Hb_001390_100--Hb_025194_090 Hb_000094_100 Hb_000094_100 Hb_001390_100--Hb_000094_100 Hb_001390_100--Hb_000496_130 Hb_001390_100--Hb_138585_030 Hb_000331_420 Hb_000331_420 Hb_000331_570--Hb_000331_420 Hb_002871_040 Hb_002871_040 Hb_000331_570--Hb_002871_040 Hb_000331_570--Hb_002627_040 Hb_000331_570--Hb_101334_020 Hb_000331_570--Hb_001390_100 Hb_000331_570--Hb_070624_010 Hb_017193_010--Hb_002871_040 Hb_172979_010 Hb_172979_010 Hb_017193_010--Hb_172979_010 Hb_001623_500 Hb_001623_500 Hb_017193_010--Hb_001623_500 Hb_003835_110 Hb_003835_110 Hb_017193_010--Hb_003835_110 Hb_000579_080 Hb_000579_080 Hb_017193_010--Hb_000579_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65711 5.49807 34.1432 12.6739 5.23829 2.23668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12081 5.18369 6.91857 18.1576 20.0359

CAGE analysis