Hb_001009_140

Information

Type -
Description -
Location Contig1009: 84891-89474
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09580g
description POPTRDRAFT_570216; hypothetical protein
nr
ID KDP30961.1
description hypothetical protein JCGZ_11337 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K405
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11337 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00530: 85490-88876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_140 0.0 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
2 Hb_005665_090 0.0940004327 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
3 Hb_101334_020 0.09402375 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
4 Hb_000589_170 0.0964193668 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
5 Hb_000029_400 0.0974856415 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
6 Hb_006588_190 0.0990613081 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
7 Hb_000116_250 0.099267552 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
8 Hb_187247_020 0.1021708551 - - PREDICTED: uncharacterized protein LOC101220469 [Cucumis sativus]
9 Hb_001390_100 0.1033903655 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
10 Hb_003680_220 0.1083870018 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
11 Hb_008375_030 0.1089390038 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
12 Hb_070624_010 0.1102194614 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
13 Hb_000500_220 0.1103752181 - - PREDICTED: intersectin-1 [Jatropha curcas]
14 Hb_021596_020 0.1110431886 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
15 Hb_001587_040 0.1127217858 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
16 Hb_000926_060 0.1159497821 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000189_130 0.1160111062 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
18 Hb_017193_010 0.1194702121 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
19 Hb_001623_500 0.1195950803 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
20 Hb_000007_090 0.1197105499 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001009_140 Hb_001009_140 Hb_005665_090 Hb_005665_090 Hb_001009_140--Hb_005665_090 Hb_101334_020 Hb_101334_020 Hb_001009_140--Hb_101334_020 Hb_000589_170 Hb_000589_170 Hb_001009_140--Hb_000589_170 Hb_000029_400 Hb_000029_400 Hb_001009_140--Hb_000029_400 Hb_006588_190 Hb_006588_190 Hb_001009_140--Hb_006588_190 Hb_000116_250 Hb_000116_250 Hb_001009_140--Hb_000116_250 Hb_012779_080 Hb_012779_080 Hb_005665_090--Hb_012779_080 Hb_009288_040 Hb_009288_040 Hb_005665_090--Hb_009288_040 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_010620_050 Hb_010620_050 Hb_005665_090--Hb_010620_050 Hb_000230_530 Hb_000230_530 Hb_101334_020--Hb_000230_530 Hb_001390_100 Hb_001390_100 Hb_101334_020--Hb_001390_100 Hb_003529_040 Hb_003529_040 Hb_101334_020--Hb_003529_040 Hb_017193_010 Hb_017193_010 Hb_101334_020--Hb_017193_010 Hb_009296_020 Hb_009296_020 Hb_101334_020--Hb_009296_020 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_001504_010 Hb_001504_010 Hb_000029_400--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_000029_400--Hb_007483_070 Hb_001882_010 Hb_001882_010 Hb_000029_400--Hb_001882_010 Hb_001053_190 Hb_001053_190 Hb_000029_400--Hb_001053_190 Hb_000163_260 Hb_000163_260 Hb_000029_400--Hb_000163_260 Hb_000926_060 Hb_000926_060 Hb_000029_400--Hb_000926_060 Hb_011381_040 Hb_011381_040 Hb_006588_190--Hb_011381_040 Hb_000327_330 Hb_000327_330 Hb_006588_190--Hb_000327_330 Hb_000800_020 Hb_000800_020 Hb_006588_190--Hb_000800_020 Hb_007217_010 Hb_007217_010 Hb_006588_190--Hb_007217_010 Hb_006588_190--Hb_000163_260 Hb_138585_030 Hb_138585_030 Hb_000116_250--Hb_138585_030 Hb_000116_250--Hb_001390_100 Hb_000585_110 Hb_000585_110 Hb_000116_250--Hb_000585_110 Hb_003355_010 Hb_003355_010 Hb_000116_250--Hb_003355_010 Hb_003440_020 Hb_003440_020 Hb_000116_250--Hb_003440_020 Hb_000007_090 Hb_000007_090 Hb_000116_250--Hb_000007_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19737 2.02883 6.9244 3.61869 0.732434 0.984714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23048 2.18679 0.66573 3.09322 4.80552

CAGE analysis