Hb_001882_010

Information

Type -
Description -
Location Contig1882: 6591-11664
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18572: 6650-11615 , PASA_asmbl_18573: 6650-11615 , PASA_asmbl_18575: 6691-6859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_010 0.0 - - -
2 Hb_000163_260 0.0718985689 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
3 Hb_000291_180 0.0730021814 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
4 Hb_000029_400 0.0782478948 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
5 Hb_000007_090 0.0786749059 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
6 Hb_160271_010 0.0792984798 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
7 Hb_073973_090 0.0798744412 - - Aminotransferase ybdL, putative [Ricinus communis]
8 Hb_001504_010 0.0807548771 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
9 Hb_001832_200 0.0810015027 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
10 Hb_002631_240 0.0831462544 - - JHL17M24.3 [Jatropha curcas]
11 Hb_006907_060 0.0839554452 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
12 Hb_000108_020 0.0842834575 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
13 Hb_000907_180 0.0848460802 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
14 Hb_156850_100 0.0854169947 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
15 Hb_048093_010 0.0875632985 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
16 Hb_068079_010 0.0878751223 - - -
17 Hb_000926_080 0.0886554278 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
18 Hb_000086_080 0.0888746583 - - conserved hypothetical protein [Ricinus communis]
19 Hb_021596_020 0.089977438 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
20 Hb_000200_300 0.0912034203 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]

Gene co-expression network

sample Hb_001882_010 Hb_001882_010 Hb_000163_260 Hb_000163_260 Hb_001882_010--Hb_000163_260 Hb_000291_180 Hb_000291_180 Hb_001882_010--Hb_000291_180 Hb_000029_400 Hb_000029_400 Hb_001882_010--Hb_000029_400 Hb_000007_090 Hb_000007_090 Hb_001882_010--Hb_000007_090 Hb_160271_010 Hb_160271_010 Hb_001882_010--Hb_160271_010 Hb_073973_090 Hb_073973_090 Hb_001882_010--Hb_073973_090 Hb_001504_010 Hb_001504_010 Hb_000163_260--Hb_001504_010 Hb_012438_030 Hb_012438_030 Hb_000163_260--Hb_012438_030 Hb_009476_130 Hb_009476_130 Hb_000163_260--Hb_009476_130 Hb_001703_040 Hb_001703_040 Hb_000163_260--Hb_001703_040 Hb_000120_890 Hb_000120_890 Hb_000163_260--Hb_000120_890 Hb_000291_180--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_000291_180--Hb_048093_010 Hb_000108_020 Hb_000108_020 Hb_000291_180--Hb_000108_020 Hb_000680_010 Hb_000680_010 Hb_000291_180--Hb_000680_010 Hb_068079_010 Hb_068079_010 Hb_000291_180--Hb_068079_010 Hb_000029_400--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_000029_400--Hb_007483_070 Hb_001053_190 Hb_001053_190 Hb_000029_400--Hb_001053_190 Hb_000029_400--Hb_000163_260 Hb_000926_060 Hb_000926_060 Hb_000029_400--Hb_000926_060 Hb_000585_110 Hb_000585_110 Hb_000007_090--Hb_000585_110 Hb_002687_200 Hb_002687_200 Hb_000007_090--Hb_002687_200 Hb_003680_220 Hb_003680_220 Hb_000007_090--Hb_003680_220 Hb_002249_080 Hb_002249_080 Hb_000007_090--Hb_002249_080 Hb_008725_270 Hb_008725_270 Hb_000007_090--Hb_008725_270 Hb_019654_020 Hb_019654_020 Hb_000007_090--Hb_019654_020 Hb_022693_130 Hb_022693_130 Hb_160271_010--Hb_022693_130 Hb_000320_190 Hb_000320_190 Hb_160271_010--Hb_000320_190 Hb_156850_100 Hb_156850_100 Hb_160271_010--Hb_156850_100 Hb_002107_050 Hb_002107_050 Hb_160271_010--Hb_002107_050 Hb_160271_010--Hb_000108_020 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9372 14.9994 45.6398 36.401 12.0292 14.4464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8724 20.5561 10.061 18.7818 39.6573

CAGE analysis