Hb_000320_190

Information

Type -
Description -
Location Contig320: 150731-152699
Sequence    

Annotation

kegg
ID tcc:TCM_030256
description Glycine cleavage T-protein family isoform 1
nr
ID XP_012091320.1
description PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
swissprot
ID P54260
description Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1
trembl
ID A0A067JAF8
description Aminomethyltransferase OS=Jatropha curcas GN=JCGZ_21198 PE=3 SV=1
Gene Ontology
ID GO:0009534
description mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33791: 151119-151751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_190 0.0 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
2 Hb_012779_080 0.0546403414 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
3 Hb_160271_010 0.0664386221 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
4 Hb_002915_010 0.0768823518 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
5 Hb_001396_020 0.0810353261 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
6 Hb_000645_180 0.0818969378 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
7 Hb_005665_090 0.082399226 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
8 Hb_010620_050 0.0870704377 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
9 Hb_001623_490 0.0880693836 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
10 Hb_001430_020 0.0883180267 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
11 Hb_012438_030 0.0915955501 - - PREDICTED: protein sym-1 [Jatropha curcas]
12 Hb_002218_020 0.0918105983 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
13 Hb_021596_020 0.0921713357 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
14 Hb_138585_030 0.0943837497 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
15 Hb_022693_130 0.0946400792 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_000680_010 0.0952143306 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
17 Hb_000108_020 0.096353654 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
18 Hb_102948_010 0.0971461678 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
19 Hb_003883_010 0.0975294611 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
20 Hb_000748_090 0.0978423724 - - glucose inhibited division protein A, putative [Ricinus communis]

Gene co-expression network

sample Hb_000320_190 Hb_000320_190 Hb_012779_080 Hb_012779_080 Hb_000320_190--Hb_012779_080 Hb_160271_010 Hb_160271_010 Hb_000320_190--Hb_160271_010 Hb_002915_010 Hb_002915_010 Hb_000320_190--Hb_002915_010 Hb_001396_020 Hb_001396_020 Hb_000320_190--Hb_001396_020 Hb_000645_180 Hb_000645_180 Hb_000320_190--Hb_000645_180 Hb_005665_090 Hb_005665_090 Hb_000320_190--Hb_005665_090 Hb_012779_080--Hb_005665_090 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_012779_080--Hb_002915_010 Hb_010620_050 Hb_010620_050 Hb_012779_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_012779_080--Hb_009288_040 Hb_022693_130 Hb_022693_130 Hb_160271_010--Hb_022693_130 Hb_000291_180 Hb_000291_180 Hb_160271_010--Hb_000291_180 Hb_156850_100 Hb_156850_100 Hb_160271_010--Hb_156850_100 Hb_002107_050 Hb_002107_050 Hb_160271_010--Hb_002107_050 Hb_000108_020 Hb_000108_020 Hb_160271_010--Hb_000108_020 Hb_003883_010 Hb_003883_010 Hb_002915_010--Hb_003883_010 Hb_002915_010--Hb_002107_050 Hb_000094_100 Hb_000094_100 Hb_002915_010--Hb_000094_100 Hb_000680_010 Hb_000680_010 Hb_002915_010--Hb_000680_010 Hb_001279_020 Hb_001279_020 Hb_001396_020--Hb_001279_020 Hb_000300_560 Hb_000300_560 Hb_001396_020--Hb_000300_560 Hb_000482_050 Hb_000482_050 Hb_001396_020--Hb_000482_050 Hb_002600_070 Hb_002600_070 Hb_001396_020--Hb_002600_070 Hb_000529_130 Hb_000529_130 Hb_001396_020--Hb_000529_130 Hb_001396_020--Hb_012779_080 Hb_068079_010 Hb_068079_010 Hb_000645_180--Hb_068079_010 Hb_000645_180--Hb_022693_130 Hb_000645_180--Hb_012779_080 Hb_000645_180--Hb_000108_020 Hb_070624_010 Hb_070624_010 Hb_000645_180--Hb_070624_010 Hb_005665_090--Hb_009288_040 Hb_005665_090--Hb_001623_490 Hb_005665_090--Hb_000645_180 Hb_005665_090--Hb_010620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08835 4.10904 12.0426 6.47027 2.04115 3.50131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59256 1.89166 2.75794 2.74379 9.69833

CAGE analysis