Hb_007217_010

Information

Type -
Description -
Location Contig7217: 21667-24915
Sequence    

Annotation

kegg
ID rcu:RCOM_1316770
description plastidial glycerol-phosphate acyltransferase (EC:2.3.1.15)
nr
ID XP_012080786.1
description PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
swissprot
ID P30706
description Glycerol-3-phosphate acyltransferase, chloroplastic OS=Pisum sativum GN=GPAT PE=1 SV=1
trembl
ID A0A067K3C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16136 PE=4 SV=1
Gene Ontology
ID GO:0009570
description glycerol-3-phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007217_010 0.0 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
2 Hb_000212_250 0.0693062625 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006588_190 0.0865753478 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
4 Hb_011476_030 0.0930347344 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
5 Hb_002986_090 0.0940050154 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000392_450 0.0961886492 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
7 Hb_000094_100 0.0966686308 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
8 Hb_002027_320 0.1011273047 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
9 Hb_005665_090 0.1029093133 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
10 Hb_002871_040 0.1034798473 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
11 Hb_004517_030 0.1045802418 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007451_040 0.1087593137 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
13 Hb_007263_010 0.1095779109 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
14 Hb_001390_100 0.1096998298 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
15 Hb_153553_040 0.1150730255 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
16 Hb_003835_110 0.1156016721 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
17 Hb_011381_040 0.1163234653 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
18 Hb_000181_060 0.1170223936 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
19 Hb_012779_080 0.1175921918 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
20 Hb_008375_030 0.1176941179 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_007217_010 Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_007217_010--Hb_000212_250 Hb_006588_190 Hb_006588_190 Hb_007217_010--Hb_006588_190 Hb_011476_030 Hb_011476_030 Hb_007217_010--Hb_011476_030 Hb_002986_090 Hb_002986_090 Hb_007217_010--Hb_002986_090 Hb_000392_450 Hb_000392_450 Hb_007217_010--Hb_000392_450 Hb_000094_100 Hb_000094_100 Hb_007217_010--Hb_000094_100 Hb_004517_030 Hb_004517_030 Hb_000212_250--Hb_004517_030 Hb_153553_040 Hb_153553_040 Hb_000212_250--Hb_153553_040 Hb_000212_250--Hb_011476_030 Hb_000212_250--Hb_000392_450 Hb_005665_090 Hb_005665_090 Hb_000212_250--Hb_005665_090 Hb_011381_040 Hb_011381_040 Hb_006588_190--Hb_011381_040 Hb_000327_330 Hb_000327_330 Hb_006588_190--Hb_000327_330 Hb_000800_020 Hb_000800_020 Hb_006588_190--Hb_000800_020 Hb_000163_260 Hb_000163_260 Hb_006588_190--Hb_000163_260 Hb_001009_140 Hb_001009_140 Hb_006588_190--Hb_001009_140 Hb_000574_470 Hb_000574_470 Hb_011476_030--Hb_000574_470 Hb_027445_100 Hb_027445_100 Hb_011476_030--Hb_027445_100 Hb_002915_010 Hb_002915_010 Hb_011476_030--Hb_002915_010 Hb_011476_030--Hb_005665_090 Hb_163950_070 Hb_163950_070 Hb_002986_090--Hb_163950_070 Hb_009288_040 Hb_009288_040 Hb_002986_090--Hb_009288_040 Hb_002986_090--Hb_000094_100 Hb_006907_060 Hb_006907_060 Hb_002986_090--Hb_006907_060 Hb_001959_060 Hb_001959_060 Hb_002986_090--Hb_001959_060 Hb_000392_450--Hb_004517_030 Hb_007263_010 Hb_007263_010 Hb_000392_450--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000392_450--Hb_002027_320 Hb_003874_010 Hb_003874_010 Hb_000392_450--Hb_003874_010 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_012779_080 Hb_012779_080 Hb_000094_100--Hb_012779_080 Hb_000094_100--Hb_002915_010 Hb_000094_100--Hb_005665_090 Hb_010620_050 Hb_010620_050 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.86969 9.18299 52.6488 15.6947 6.28509 6.51663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.56086 12.7527 6.31114 9.55483 28.3884

CAGE analysis