Hb_163950_070

Information

Type -
Description -
Location Contig163950: 62279-69536
Sequence    

Annotation

kegg
ID rcu:RCOM_1497410
description arginine/serine-rich splicing factor, putative
nr
ID XP_002510842.1
description arginine/serine-rich splicing factor, putative [Ricinus communis]
swissprot
ID P92965
description Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 SV=2
trembl
ID B9R9G7
description Arginine/serine-rich splicing factor, putative OS=Ricinus communis GN=RCOM_1497410 PE=4 SV=1
Gene Ontology
ID GO:0097159
description serine arginine-rich splicing factor rs40 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15046: 66771-68883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163950_070 0.0 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
2 Hb_000608_390 0.088699685 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
3 Hb_002986_090 0.096767554 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_006198_130 0.0982776971 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
5 Hb_006787_090 0.1014443139 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
6 Hb_002044_020 0.1119111456 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
7 Hb_009288_040 0.1119697483 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
8 Hb_000094_100 0.1125082836 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
9 Hb_002107_050 0.1171355003 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
10 Hb_002915_010 0.1173335446 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
11 Hb_001959_060 0.1181714302 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
12 Hb_000181_060 0.1196891269 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
13 Hb_004586_430 0.1199171932 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
14 Hb_001623_130 0.120285521 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000284_130 0.1207056072 - - sodium-bile acid cotransporter, putative [Ricinus communis]
16 Hb_012779_080 0.1207698929 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
17 Hb_000613_120 0.1225163048 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
18 Hb_004871_010 0.1229988775 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
19 Hb_003883_010 0.1240137789 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
20 Hb_000059_270 0.1268020057 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_163950_070 Hb_163950_070 Hb_000608_390 Hb_000608_390 Hb_163950_070--Hb_000608_390 Hb_002986_090 Hb_002986_090 Hb_163950_070--Hb_002986_090 Hb_006198_130 Hb_006198_130 Hb_163950_070--Hb_006198_130 Hb_006787_090 Hb_006787_090 Hb_163950_070--Hb_006787_090 Hb_002044_020 Hb_002044_020 Hb_163950_070--Hb_002044_020 Hb_009288_040 Hb_009288_040 Hb_163950_070--Hb_009288_040 Hb_000094_100 Hb_000094_100 Hb_000608_390--Hb_000094_100 Hb_005665_090 Hb_005665_090 Hb_000608_390--Hb_005665_090 Hb_000608_390--Hb_002986_090 Hb_000608_390--Hb_002044_020 Hb_002915_010 Hb_002915_010 Hb_000608_390--Hb_002915_010 Hb_007217_010 Hb_007217_010 Hb_002986_090--Hb_007217_010 Hb_002986_090--Hb_009288_040 Hb_002986_090--Hb_000094_100 Hb_006907_060 Hb_006907_060 Hb_002986_090--Hb_006907_060 Hb_001959_060 Hb_001959_060 Hb_002986_090--Hb_001959_060 Hb_003171_030 Hb_003171_030 Hb_006198_130--Hb_003171_030 Hb_009687_020 Hb_009687_020 Hb_006198_130--Hb_009687_020 Hb_000059_270 Hb_000059_270 Hb_006198_130--Hb_000059_270 Hb_001269_500 Hb_001269_500 Hb_006198_130--Hb_001269_500 Hb_001220_050 Hb_001220_050 Hb_006198_130--Hb_001220_050 Hb_000311_120 Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_006787_090--Hb_010174_090 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_029695_070 Hb_029695_070 Hb_002044_020--Hb_029695_070 Hb_002044_020--Hb_000094_100 Hb_001789_160 Hb_001789_160 Hb_002044_020--Hb_001789_160 Hb_000061_150 Hb_000061_150 Hb_002044_020--Hb_000061_150 Hb_000645_180 Hb_000645_180 Hb_002044_020--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_002044_020--Hb_000265_070 Hb_003752_090 Hb_003752_090 Hb_009288_040--Hb_003752_090 Hb_009288_040--Hb_005665_090 Hb_012779_080 Hb_012779_080 Hb_009288_040--Hb_012779_080 Hb_010620_050 Hb_010620_050 Hb_009288_040--Hb_010620_050 Hb_009288_040--Hb_000094_100 Hb_000465_440 Hb_000465_440 Hb_009288_040--Hb_000465_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11512 1.61318 11.875 5.34869 3.64518 1.66552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63706 2.75368 1.72081 1.86587 11.4075

CAGE analysis