Hb_000608_390

Information

Type -
Description -
Location Contig608: 217021-223849
Sequence    

Annotation

kegg
ID vvi:100247868
description dehydrogenase/reductase SDR family member 7
nr
ID KJB66457.1
description hypothetical protein B456_010G140700 [Gossypium raimondii]
swissprot
ID Q9Y394
description Dehydrogenase/reductase SDR family member 7 OS=Homo sapiens GN=DHRS7 PE=1 SV=1
trembl
ID A0A0D2R7V0
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G140700 PE=4 SV=1
Gene Ontology
ID GO:0016491
description dehydrogenase reductase sdr family member 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50869: 217047-223870
cDNA
(Sanger)
(ID:Location)		 004_A21.ab1: 217125-222483

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_390 0.0 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
2 Hb_163950_070 0.088699685 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
3 Hb_000094_100 0.0913038917 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
4 Hb_005665_090 0.1049508543 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
5 Hb_002986_090 0.1083722436 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_002044_020 0.1106702206 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
7 Hb_002915_010 0.1134693026 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
8 Hb_002627_040 0.1136902042 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
9 Hb_012779_080 0.114751844 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
10 Hb_003835_110 0.1156335832 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
11 Hb_138585_030 0.1158494172 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
12 Hb_009288_040 0.116015823 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
13 Hb_002498_160 0.116739052 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
14 Hb_010620_050 0.1176838777 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
15 Hb_003883_010 0.1205395636 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
16 Hb_002107_050 0.1220511187 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
17 Hb_000566_010 0.1224360762 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
18 Hb_002871_040 0.1238185686 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
19 Hb_003994_080 0.1243233521 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
20 Hb_006907_060 0.1246449282 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000608_390 Hb_000608_390 Hb_163950_070 Hb_163950_070 Hb_000608_390--Hb_163950_070 Hb_000094_100 Hb_000094_100 Hb_000608_390--Hb_000094_100 Hb_005665_090 Hb_005665_090 Hb_000608_390--Hb_005665_090 Hb_002986_090 Hb_002986_090 Hb_000608_390--Hb_002986_090 Hb_002044_020 Hb_002044_020 Hb_000608_390--Hb_002044_020 Hb_002915_010 Hb_002915_010 Hb_000608_390--Hb_002915_010 Hb_163950_070--Hb_002986_090 Hb_006198_130 Hb_006198_130 Hb_163950_070--Hb_006198_130 Hb_006787_090 Hb_006787_090 Hb_163950_070--Hb_006787_090 Hb_163950_070--Hb_002044_020 Hb_009288_040 Hb_009288_040 Hb_163950_070--Hb_009288_040 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_012779_080 Hb_012779_080 Hb_000094_100--Hb_012779_080 Hb_000094_100--Hb_002915_010 Hb_000094_100--Hb_005665_090 Hb_010620_050 Hb_010620_050 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030 Hb_005665_090--Hb_012779_080 Hb_005665_090--Hb_009288_040 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_005665_090--Hb_010620_050 Hb_007217_010 Hb_007217_010 Hb_002986_090--Hb_007217_010 Hb_002986_090--Hb_009288_040 Hb_002986_090--Hb_000094_100 Hb_006907_060 Hb_006907_060 Hb_002986_090--Hb_006907_060 Hb_001959_060 Hb_001959_060 Hb_002986_090--Hb_001959_060 Hb_029695_070 Hb_029695_070 Hb_002044_020--Hb_029695_070 Hb_002044_020--Hb_000094_100 Hb_002044_020--Hb_001789_160 Hb_000061_150 Hb_000061_150 Hb_002044_020--Hb_000061_150 Hb_002044_020--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_002044_020--Hb_000265_070 Hb_002915_010--Hb_012779_080 Hb_003883_010 Hb_003883_010 Hb_002915_010--Hb_003883_010 Hb_002915_010--Hb_000320_190 Hb_002107_050 Hb_002107_050 Hb_002915_010--Hb_002107_050 Hb_000680_010 Hb_000680_010 Hb_002915_010--Hb_000680_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.75568 5.86629 34.9989 18.4505 8.62488 2.91517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.32787 6.53704 7.48518 6.48953 27.3791

CAGE analysis