Hb_002044_020

Information

Type -
Description -
Location Contig2044: 39481-44021
Sequence    

Annotation

kegg
ID gmx:100790187
description glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic-like
nr
ID AIA24558.1
description glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
swissprot
ID P52417
description Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1
trembl
ID A0A059XIW1
description Glucose-1-phosphate adenylyltransferase OS=Hevea brasiliensis GN=SSUI PE=2 SV=1
Gene Ontology
ID GO:0009570
description glucose-1-phosphate adenylyltransferase small subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20998: 39459-41490 , PASA_asmbl_20999: 43272-44009
cDNA
(Sanger)
(ID:Location)		 027_G11.ab1: 39459-41490

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_020 0.0 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
2 Hb_029695_070 0.0805403696 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
3 Hb_000094_100 0.0965254036 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
4 Hb_001789_160 0.1054640026 - - PREDICTED: putative transporter arsB [Jatropha curcas]
5 Hb_000061_150 0.1059682947 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
6 Hb_000645_180 0.1076203439 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
7 Hb_000265_070 0.1093495636 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
8 Hb_000608_390 0.1106702206 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
9 Hb_163950_070 0.1119111456 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
10 Hb_012653_030 0.1146156035 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_001390_100 0.1147984125 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
12 Hb_000194_010 0.1169331286 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
13 Hb_002627_040 0.1173031194 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
14 Hb_002986_090 0.1186712388 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_070624_010 0.1192343245 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
16 Hb_007594_040 0.1192912375 - - calcium lipid binding protein, putative [Ricinus communis]
17 Hb_189003_060 0.1197664723 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000035_210 0.1214188119 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
19 Hb_002498_160 0.1218645886 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
20 Hb_012779_080 0.1228788944 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_002044_020 Hb_002044_020 Hb_029695_070 Hb_029695_070 Hb_002044_020--Hb_029695_070 Hb_000094_100 Hb_000094_100 Hb_002044_020--Hb_000094_100 Hb_001789_160 Hb_001789_160 Hb_002044_020--Hb_001789_160 Hb_000061_150 Hb_000061_150 Hb_002044_020--Hb_000061_150 Hb_000645_180 Hb_000645_180 Hb_002044_020--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_002044_020--Hb_000265_070 Hb_070624_010 Hb_070624_010 Hb_029695_070--Hb_070624_010 Hb_029695_070--Hb_000265_070 Hb_029695_070--Hb_000645_180 Hb_003160_070 Hb_003160_070 Hb_029695_070--Hb_003160_070 Hb_005665_090 Hb_005665_090 Hb_029695_070--Hb_005665_090 Hb_000094_100--Hb_001789_160 Hb_012779_080 Hb_012779_080 Hb_000094_100--Hb_012779_080 Hb_002915_010 Hb_002915_010 Hb_000094_100--Hb_002915_010 Hb_000094_100--Hb_005665_090 Hb_010620_050 Hb_010620_050 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030 Hb_003071_030 Hb_003071_030 Hb_001789_160--Hb_003071_030 Hb_031042_060 Hb_031042_060 Hb_001789_160--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_001789_160--Hb_000302_190 Hb_000613_120 Hb_000613_120 Hb_001789_160--Hb_000613_120 Hb_000260_710 Hb_000260_710 Hb_001789_160--Hb_000260_710 Hb_000194_010 Hb_000194_010 Hb_000061_150--Hb_000194_010 Hb_007594_040 Hb_007594_040 Hb_000061_150--Hb_007594_040 Hb_005527_010 Hb_005527_010 Hb_000061_150--Hb_005527_010 Hb_006846_070 Hb_006846_070 Hb_000061_150--Hb_006846_070 Hb_001454_150 Hb_001454_150 Hb_000061_150--Hb_001454_150 Hb_068079_010 Hb_068079_010 Hb_000645_180--Hb_068079_010 Hb_022693_130 Hb_022693_130 Hb_000645_180--Hb_022693_130 Hb_000645_180--Hb_012779_080 Hb_000108_020 Hb_000108_020 Hb_000645_180--Hb_000108_020 Hb_000645_180--Hb_070624_010 Hb_000320_190 Hb_000320_190 Hb_000645_180--Hb_000320_190 Hb_000358_210 Hb_000358_210 Hb_000265_070--Hb_000358_210 Hb_009524_030 Hb_009524_030 Hb_000265_070--Hb_009524_030 Hb_000265_070--Hb_070624_010 Hb_002392_020 Hb_002392_020 Hb_000265_070--Hb_002392_020 Hb_007943_150 Hb_007943_150 Hb_000265_070--Hb_007943_150 Hb_000265_070--Hb_000645_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26365 1.65886 19.1805 7.5777 3.97248 3.51052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.68667 2.47902 3.3096 5.18728 14.7104

CAGE analysis