Hb_007594_040

Information

Type -
Description -
Location Contig7594: 20331-26476
Sequence    

Annotation

kegg
ID rcu:RCOM_1612600
description calcium lipid binding protein, putative
nr
ID XP_002511750.1
description calcium lipid binding protein, putative [Ricinus communis]
swissprot
ID A0JJX5
description Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1
trembl
ID B9RDG1
description Calcium lipid binding protein, putative OS=Ricinus communis GN=RCOM_1612600 PE=4 SV=1
Gene Ontology
ID GO:0005515
description calcium-dependent lipid-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57189: 20626-26445
cDNA
(Sanger)
(ID:Location)		 001_N16.ab1: 25952-26358

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007594_040 0.0 - - calcium lipid binding protein, putative [Ricinus communis]
2 Hb_000061_150 0.1011762482 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
3 Hb_002044_020 0.1192912375 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
4 Hb_006846_070 0.1206823538 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
5 Hb_000613_120 0.1276319356 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
6 Hb_001789_160 0.1309196413 - - PREDICTED: putative transporter arsB [Jatropha curcas]
7 Hb_002027_320 0.1340224938 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
8 Hb_163950_070 0.1364411433 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
9 Hb_001623_130 0.1379330536 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_021732_010 0.1379602252 - - biotin carboxylase [Vernicia fordii]
11 Hb_021650_010 0.1400619135 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
12 Hb_001511_160 0.1417422315 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003835_110 0.1430496933 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
14 Hb_000608_390 0.1437782844 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
15 Hb_005162_110 0.1443439746 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
16 Hb_005527_010 0.1452304985 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000284_130 0.1457169465 - - sodium-bile acid cotransporter, putative [Ricinus communis]
18 Hb_002986_090 0.1465071119 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_006816_190 0.1469250503 - - calreticulin family protein [Populus trichocarpa]
20 Hb_000724_020 0.1472093711 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]

Gene co-expression network

sample Hb_007594_040 Hb_007594_040 Hb_000061_150 Hb_000061_150 Hb_007594_040--Hb_000061_150 Hb_002044_020 Hb_002044_020 Hb_007594_040--Hb_002044_020 Hb_006846_070 Hb_006846_070 Hb_007594_040--Hb_006846_070 Hb_000613_120 Hb_000613_120 Hb_007594_040--Hb_000613_120 Hb_001789_160 Hb_001789_160 Hb_007594_040--Hb_001789_160 Hb_002027_320 Hb_002027_320 Hb_007594_040--Hb_002027_320 Hb_000194_010 Hb_000194_010 Hb_000061_150--Hb_000194_010 Hb_000061_150--Hb_002044_020 Hb_005527_010 Hb_005527_010 Hb_000061_150--Hb_005527_010 Hb_000061_150--Hb_006846_070 Hb_001454_150 Hb_001454_150 Hb_000061_150--Hb_001454_150 Hb_029695_070 Hb_029695_070 Hb_002044_020--Hb_029695_070 Hb_000094_100 Hb_000094_100 Hb_002044_020--Hb_000094_100 Hb_002044_020--Hb_001789_160 Hb_000645_180 Hb_000645_180 Hb_002044_020--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_002044_020--Hb_000265_070 Hb_000984_270 Hb_000984_270 Hb_006846_070--Hb_000984_270 Hb_000416_200 Hb_000416_200 Hb_006846_070--Hb_000416_200 Hb_004109_260 Hb_004109_260 Hb_006846_070--Hb_004109_260 Hb_000480_040 Hb_000480_040 Hb_006846_070--Hb_000480_040 Hb_001604_120 Hb_001604_120 Hb_006846_070--Hb_001604_120 Hb_010174_090 Hb_010174_090 Hb_000613_120--Hb_010174_090 Hb_000802_130 Hb_000802_130 Hb_000613_120--Hb_000802_130 Hb_000613_120--Hb_001789_160 Hb_006787_090 Hb_006787_090 Hb_000613_120--Hb_006787_090 Hb_000613_120--Hb_004109_260 Hb_031042_060 Hb_031042_060 Hb_000613_120--Hb_031042_060 Hb_003071_030 Hb_003071_030 Hb_001789_160--Hb_003071_030 Hb_001789_160--Hb_000094_100 Hb_001789_160--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_001789_160--Hb_000302_190 Hb_000260_710 Hb_000260_710 Hb_001789_160--Hb_000260_710 Hb_007263_010 Hb_007263_010 Hb_002027_320--Hb_007263_010 Hb_000392_450 Hb_000392_450 Hb_002027_320--Hb_000392_450 Hb_004994_080 Hb_004994_080 Hb_002027_320--Hb_004994_080 Hb_011386_050 Hb_011386_050 Hb_002027_320--Hb_011386_050 Hb_011381_040 Hb_011381_040 Hb_002027_320--Hb_011381_040 Hb_000181_060 Hb_000181_060 Hb_002027_320--Hb_000181_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02865 1.57201 19.431 6.6521 8.81115 4.21335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34488 3.33756 4.94238 3.88924 12.6667

CAGE analysis