Hb_001789_160

Information

Type -
Description -
Location Contig1789: 165904-175813
Sequence    

Annotation

kegg
ID rcu:RCOM_1583060
description arsenite transport protein, putative
nr
ID XP_012090217.1
description PREDICTED: putative transporter arsB [Jatropha curcas]
swissprot
ID Q54GU0
description Putative transporter arsB OS=Dictyostelium discoideum GN=arsB PE=2 SV=1
trembl
ID A0A067JQJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26081 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transporter arsb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17223: 170426-170831 , PASA_asmbl_17224: 172741-175667 , PASA_asmbl_17225: 172810-175661 , PASA_asmbl_17226: 172810-175661 , PASA_asmbl_17227: 173093-173397
cDNA
(Sanger)
(ID:Location)		 006_E10.ab1: 174385-175661

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_160 0.0 - - PREDICTED: putative transporter arsB [Jatropha curcas]
2 Hb_003071_030 0.0752436337 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
3 Hb_000094_100 0.0763064161 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
4 Hb_031042_060 0.0771429056 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_000302_190 0.0788628379 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
6 Hb_000613_120 0.0818549707 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
7 Hb_000260_710 0.0820925337 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
8 Hb_012779_080 0.0961432594 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
9 Hb_001454_150 0.0971200358 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
10 Hb_010620_050 0.1003827157 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
11 Hb_010344_020 0.1005195634 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
12 Hb_138585_030 0.1008061324 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
13 Hb_001279_090 0.1014576202 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
14 Hb_004871_010 0.1044323347 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
15 Hb_002044_020 0.1054640026 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
16 Hb_002107_050 0.1070544904 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
17 Hb_001396_020 0.1074530091 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
18 Hb_000320_190 0.1078822725 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_002915_010 0.1094341948 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
20 Hb_010174_090 0.1097803561 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001789_160 Hb_001789_160 Hb_003071_030 Hb_003071_030 Hb_001789_160--Hb_003071_030 Hb_000094_100 Hb_000094_100 Hb_001789_160--Hb_000094_100 Hb_031042_060 Hb_031042_060 Hb_001789_160--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_001789_160--Hb_000302_190 Hb_000613_120 Hb_000613_120 Hb_001789_160--Hb_000613_120 Hb_000260_710 Hb_000260_710 Hb_001789_160--Hb_000260_710 Hb_010620_050 Hb_010620_050 Hb_003071_030--Hb_010620_050 Hb_002107_050 Hb_002107_050 Hb_003071_030--Hb_002107_050 Hb_003071_030--Hb_000302_190 Hb_000327_330 Hb_000327_330 Hb_003071_030--Hb_000327_330 Hb_012779_080 Hb_012779_080 Hb_003071_030--Hb_012779_080 Hb_000094_100--Hb_012779_080 Hb_002915_010 Hb_002915_010 Hb_000094_100--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_000094_100--Hb_005665_090 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030 Hb_031042_060--Hb_000260_710 Hb_004884_180 Hb_004884_180 Hb_031042_060--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_031042_060--Hb_000363_060 Hb_010174_090 Hb_010174_090 Hb_031042_060--Hb_010174_090 Hb_021650_010 Hb_021650_010 Hb_031042_060--Hb_021650_010 Hb_001279_090 Hb_001279_090 Hb_000302_190--Hb_001279_090 Hb_000224_220 Hb_000224_220 Hb_000302_190--Hb_000224_220 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_000808_210 Hb_000808_210 Hb_000302_190--Hb_000808_210 Hb_000613_120--Hb_010174_090 Hb_000802_130 Hb_000802_130 Hb_000613_120--Hb_000802_130 Hb_006787_090 Hb_006787_090 Hb_000613_120--Hb_006787_090 Hb_004109_260 Hb_004109_260 Hb_000613_120--Hb_004109_260 Hb_000613_120--Hb_031042_060 Hb_004871_010 Hb_004871_010 Hb_000260_710--Hb_004871_010 Hb_003462_060 Hb_003462_060 Hb_000260_710--Hb_003462_060 Hb_001472_160 Hb_001472_160 Hb_000260_710--Hb_001472_160 Hb_011861_050 Hb_011861_050 Hb_000260_710--Hb_011861_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77365 2.80629 10.485 3.99006 3.38191 2.85493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38814 1.76539 2.01968 2.93772 9.409

CAGE analysis